Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ENPP7P14-201ENST00000621765 1040 ntBASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 AC006453.4-201ENST00000636949 1252 ntBASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AC112693.3-201ENST00000624819 1983 ntBASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 PPP1R16B-202ENST00000373331 6106 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 SEMA3G-201ENST00000231721 4899 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 H2BFM-203ENST00000598335 465 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 ETV2-208ENST00000621247 941 ntTSL 5 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
CHMP4AQ9BY43 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 CICP11-201ENST00000434745 2827 ntBASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 MKS1-204ENST00000537529 2083 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
CHMP4AQ9BY43 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 AC022532.1-201ENST00000624563 1728 ntBASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 MYB-242ENST00000618728 3545 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 HLA-K-203ENST00000430151 1046 ntBASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 REXO1L4P-201ENST00000605109 1937 ntBASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
CHMP4AQ9BY43 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 PTPRF-201ENST00000359947 7727 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
CHMP4AQ9BY43 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms