Protein–RNA interactions for Protein: Q96PZ7

CSMD1, CUB and sushi domain-containing protein 1, humanhuman

Predictions only

Length 3,565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1Q96PZ7 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC12.82□□□□□ -0.36
CSMD1Q96PZ7 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 RELL1-201ENST00000314117 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AC008723.1-201ENST00000506922 207 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 RN7SL163P-201ENST00000583100 276 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 MIA-206ENST00000597784 455 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 BANP-204ENST00000393208 2283 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 MBD2-201ENST00000256429 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 HLA-DPA2-205ENST00000433582 733 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 KCTD1-207ENST00000580059 1425 ntAPPRIS P1 TSL 3 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 LIPE-AS1-204ENST00000594624 1448 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 PCOLCE-201ENST00000223061 1702 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AC090502.4-201ENST00000551714 1386 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AC006449.6-201ENST00000612330 2296 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AC245100.1-201ENST00000452996 1331 ntTSL 1 (best) BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 AC006548.2-201ENST00000605217 529 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 CR392039.1-201ENST00000623217 204 ntBASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC12.81□□□□□ -0.36
CSMD1Q96PZ7 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC011270.2-201ENST00000624293 2550 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 MRPL22P1-201ENST00000505398 616 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 C11orf1-202ENST00000528125 534 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 OR10B1P-201ENST00000601666 907 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 CUTA-215ENST00000611509 1199 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC239868.1-201ENST00000369385 493 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 MIR566-201ENST00000385187 94 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC012442.2-201ENST00000414784 425 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC105362.1-201ENST00000511234 564 ntTSL 3 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 TMEM126A-203ENST00000528105 656 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AP000911.2-201ENST00000534330 502 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AL139339.2-201ENST00000608063 657 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AL358472.3-201ENST00000608147 415 ntBASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC12.8□□□□□ -0.36
CSMD1Q96PZ7 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.8□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms