Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 TMBIM7P-203ENST00000641617 1718 ntBASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC14.52□□□□□ -0.08
PTCHD1Q96NR3 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 HADH-212ENST00000638621 741 ntTSL 5 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
PTCHD1Q96NR3 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 ODF3-201ENST00000325113 1307 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 MFSD14B-201ENST00000375344 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC007389.4-201ENST00000454674 793 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 GAPDHP40-201ENST00000505218 1006 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 GLI4-203ENST00000517468 963 ntTSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC010319.3-201ENST00000597028 470 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC239800.4-201ENST00000603712 296 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 IGHV3-72-202ENST00000621503 303 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 IGFBP5-201ENST00000233813 6215 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AL138799.1-201ENST00000448213 1675 ntBASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 CTXND1-201ENST00000560778 6890 ntAPPRIS P1 TSL 3 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 CEP170B-202ENST00000414716 6705 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
PTCHD1Q96NR3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms