Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 OR6S1-201ENST00000320704 996 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 HLA-K-203ENST00000430151 1046 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 EEF1DP5-201ENST00000431410 772 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC013553.1-201ENST00000560906 267 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 MT2A-202ENST00000561491 581 ntTSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 ANAPC11-214ENST00000578544 403 ntTSL 3 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 LINC01029-202ENST00000578833 366 ntTSL 3 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC012593.1-214ENST00000586952 767 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC011477.6-201ENST00000604980 1927 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC055811.4-201ENST00000624039 1754 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 SULT1A1-201ENST00000314752 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 OR10N1P-201ENST00000392758 869 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC108734.2-201ENST00000420887 1069 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 DLG4-206ENST00000485100 1004 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC011431.1-201ENST00000512971 230 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC011383.1-201ENST00000517474 617 ntTSL 3 BASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC138696.2-201ENST00000607376 223 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 AC133540.1-201ENST00000620845 1019 ntBASIC15.16■□□□□ 0.02
TTC28Q96AY4 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TTC28Q96AY4 LDB3-204ENST00000372066 1598 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 GSTT2B-202ENST00000404172 819 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 KRT18P36-201ENST00000411618 1276 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 RNASEH2CP1-201ENST00000454281 502 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC022274.1-201ENST00000467082 490 ntTSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 SRP14-208ENST00000560773 468 ntTSL 3 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 CASP6-202ENST00000352981 1347 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 CHCHD1-202ENST00000372837 1202 ntTSL 2 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 HLA-DMA-202ENST00000395303 1007 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 ALG1L3P-201ENST00000503331 765 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 TRPC7-AS1-201ENST00000514459 460 ntTSL 3 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 IGHEP2-201ENST00000519308 1256 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 AP003040.1-201ENST00000532044 1024 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC023968.2-201ENST00000560593 1049 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC139099.2-201ENST00000572343 641 ntTSL 3 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 RN7SL300P-201ENST00000582522 318 ntBASIC15.15■□□□□ 0.02
TTC28Q96AY4 AC006207.1-201ENST00000637958 562 ntTSL 5 BASIC15.15■□□□□ 0.02
TTC28Q96AY4 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TTC28Q96AY4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.02
TTC28Q96AY4 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 RPL4P6-201ENST00000438116 1304 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.14■□□□□ 0.01
TTC28Q96AY4 RNF216P1-203ENST00000404404 2427 ntBASIC15.14■□□□□ 0.01
TTC28Q96AY4 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TTC28Q96AY4 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms