Protein–RNA interactions for Protein: Q709C8

VPS13C, Vacuolar protein sorting-associated protein 13C, humanhuman

Predictions only

Length 3,753 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13CQ709C8 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
VPS13CQ709C8 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC12.49□□□□□ -0.41
VPS13CQ709C8 AL603832.2-201ENST00000566195 2125 ntBASIC12.49□□□□□ -0.41
VPS13CQ709C8 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC12.49□□□□□ -0.41
VPS13CQ709C8 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
VPS13CQ709C8 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.49□□□□□ -0.41
VPS13CQ709C8 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 SFT2D2-202ENST00000367829 491 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AL031713.1-201ENST00000564813 661 ntBASIC12.48□□□□□ -0.41
VPS13CQ709C8 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 GLIS2-AS1-201ENST00000576080 340 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AP000552.1-203ENST00000416615 1930 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 MICALL2-201ENST00000297508 3121 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AC091951.1-201ENST00000512854 2465 ntBASIC12.48□□□□□ -0.41
VPS13CQ709C8 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 ACP7-202ENST00000594229 1149 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 NAMA-206ENST00000605377 509 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 MRPL43-206ENST00000370236 866 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 MRPL43-207ENST00000370241 824 ntTSL 5 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 TRPM2-AS-201ENST00000423310 586 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 PFN2-205ENST00000461868 613 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AC005865.1-202ENST00000543036 641 ntTSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 AC010531.4-203ENST00000561709 660 ntTSL 3 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 LINC01746-201ENST00000621390 449 ntTSL 3 BASIC12.48□□□□□ -0.41
VPS13CQ709C8 MBP-204ENST00000382582 2281 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
VPS13CQ709C8 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 FOXO4-201ENST00000341558 1353 ntTSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 NDUFB6-203ENST00000379847 1366 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 LDHAL6B-201ENST00000307144 1693 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 OTUD6A-201ENST00000338352 1689 ntAPPRIS P1 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 STK33-217ENST00000534493 1895 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AL450469.1-201ENST00000418953 461 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AP005131.2-201ENST00000589045 487 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AC005041.3-201ENST00000606287 649 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 AP003392.6-201ENST00000607709 325 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 BRMS1-201ENST00000359957 1445 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 LINC02537-201ENST00000635943 1367 ntTSL 4 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 P2RX3-201ENST00000263314 1831 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 KRT17-201ENST00000311208 1524 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 PGA5-201ENST00000312403 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 RN7SL396P-201ENST00000471086 295 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 ZNF586-206ENST00000599802 581 ntTSL 3 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 DGAT2L7P-201ENST00000602462 744 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AC073911.3-201ENST00000624401 631 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
VPS13CQ709C8 AC244394.1-201ENST00000435000 1665 ntBASIC12.47□□□□□ -0.41
VPS13CQ709C8 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC12.47□□□□□ -0.41
VPS13CQ709C8 NSUN5P1-203ENST00000422386 972 ntTSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms