Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.22□□□□□ -0.29
ABCA4P78363 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
ABCA4P78363 POM121L8P-201ENST00000417732 1281 ntBASIC13.22□□□□□ -0.29
ABCA4P78363 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC13.22□□□□□ -0.29
ABCA4P78363 POM121L9P-203ENST00000441984 1285 ntBASIC13.22□□□□□ -0.29
ABCA4P78363 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.22□□□□□ -0.29
ABCA4P78363 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC13.22□□□□□ -0.29
ABCA4P78363 CD8A-201ENST00000283635 2873 ntAPPRIS P4 TSL 1 (best) BASIC13.22□□□□□ -0.29
ABCA4P78363 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.22□□□□□ -0.29
ABCA4P78363 AC099398.1-201ENST00000567919 2776 ntBASIC13.21□□□□□ -0.29
ABCA4P78363 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
ABCA4P78363 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 WHRN-202ENST00000362057 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC13.21□□□□□ -0.29
ABCA4P78363 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC13.21□□□□□ -0.29
ABCA4P78363 AC044849.1-201ENST00000519737 1188 ntBASIC13.21□□□□□ -0.29
ABCA4P78363 MIR4741-201ENST00000579822 90 ntBASIC13.21□□□□□ -0.29
ABCA4P78363 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC13.21□□□□□ -0.29
ABCA4P78363 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.21□□□□□ -0.29
ABCA4P78363 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.29
ABCA4P78363 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC13.21□□□□□ -0.3
ABCA4P78363 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC13.21□□□□□ -0.3
ABCA4P78363 FLII-221ENST00000578558 2377 ntTSL 5 BASIC13.21□□□□□ -0.3
ABCA4P78363 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 HSP90B1-201ENST00000299767 2858 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC13.21□□□□□ -0.3
ABCA4P78363 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC13.21□□□□□ -0.3
ABCA4P78363 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.21□□□□□ -0.3
ABCA4P78363 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
ABCA4P78363 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 CD8B2-202ENST00000417670 633 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 LINC02449-203ENST00000536034 451 ntTSL 3 BASIC13.2□□□□□ -0.3
ABCA4P78363 AC128714.1-201ENST00000637035 887 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 AC006449.5-201ENST00000610658 2098 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 RCOR3-204ENST00000452621 1827 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 TMEM254-204ENST00000372277 366 ntTSL 5 BASIC13.2□□□□□ -0.3
ABCA4P78363 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC13.2□□□□□ -0.3
ABCA4P78363 SEPT12-202ENST00000396693 1156 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC13.2□□□□□ -0.3
ABCA4P78363 AL136309.1-201ENST00000403917 691 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 RPL17P11-201ENST00000417593 544 ntBASIC13.2□□□□□ -0.3
ABCA4P78363 PSMB5-203ENST00000425762 900 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
ABCA4P78363 PTPA-217ENST00000434095 870 ntTSL 2 BASIC13.2□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 65 ms