Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RRAGD-201ENST00000359203 4042 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 NFKB1-201ENST00000226574 4085 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 RNF44-201ENST00000274811 4155 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 MRPL20P1-201ENST00000400819 433 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 AC092474.2-201ENST00000424288 719 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC11.62□□□□□ -0.55
FOXA3P55318 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 AC136632.2-201ENST00000512891 861 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 PAM16-208ENST00000573553 722 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 AL450472.2-201ENST00000603663 1156 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 AC066615.1-201ENST00000640911 628 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 CTBP1-AS2-206ENST00000581398 5652 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 GLB1L3-201ENST00000389887 3566 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 ZNF655-201ENST00000252713 2535 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 IER3-202ENST00000376377 1350 ntBASIC11.62□□□□□ -0.55
FOXA3P55318 ISLR-202ENST00000395118 2175 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
FOXA3P55318 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 RNF145-202ENST00000424310 3613 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 MARVELD3-201ENST00000268485 2912 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 ACE-201ENST00000290863 2479 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 CES3-201ENST00000303334 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 GLB1L2-205ENST00000535456 3365 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 SLC37A4-216ENST00000538950 2032 ntTSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 UBE3A-224ENST00000635914 9352 ntTSL 5 BASIC11.62□□□□□ -0.55
FOXA3P55318 GRWD1-201ENST00000253237 5571 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 SUCO-201ENST00000263688 5556 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC11.62□□□□□ -0.55
FOXA3P55318 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC11.62□□□□□ -0.55
FOXA3P55318 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.62□□□□□ -0.55
FOXA3P55318 CTIF-202ENST00000382998 4407 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 KLHL9-201ENST00000359039 5710 ntAPPRIS P1 BASIC11.61□□□□□ -0.55
FOXA3P55318 FAM189A1-201ENST00000261275 4705 ntAPPRIS P1 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 Z82170.1-201ENST00000625081 3192 ntBASIC11.61□□□□□ -0.55
FOXA3P55318 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 CC2D1B-201ENST00000284376 3377 ntAPPRIS ALT2 TSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 AC060234.2-201ENST00000428825 1610 ntTSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC11.61□□□□□ -0.55
FOXA3P55318 TMEM231-207ENST00000568377 2920 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 KBTBD4-202ENST00000430070 2372 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 DISP3-201ENST00000294484 5215 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 LSM5-204ENST00000409909 740 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC11.61□□□□□ -0.55
FOXA3P55318 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 FOSL1P1-201ENST00000511041 816 ntBASIC11.61□□□□□ -0.55
FOXA3P55318 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC11.61□□□□□ -0.55
FOXA3P55318 SMIM14-201ENST00000295958 6483 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 RTN4-202ENST00000337526 4790 ntTSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 ZBTB2-201ENST00000325144 3090 ntAPPRIS P1 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 MYO16-203ENST00000357550 6779 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC11.61□□□□□ -0.55
FOXA3P55318 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC11.61□□□□□ -0.55
FOXA3P55318 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC11.61□□□□□ -0.55
FOXA3P55318 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC11.61□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms