Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
LIMK1P53667 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC15.16■□□□□ 0.02
LIMK1P53667 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
LIMK1P53667 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 AC010491.1-201ENST00000563101 2797 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 AC068418.2-201ENST00000577309 3703 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 CMA1-202ENST00000250378 937 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 TPM3P8-201ENST00000330554 643 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 VPS29-201ENST00000360579 1091 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 SMS-201ENST00000379404 1174 ntTSL 3 BASIC15.15■□□□□ 0.02
LIMK1P53667 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 AC069218.1-201ENST00000435269 762 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 AC010745.3-201ENST00000439745 415 ntTSL 3 BASIC15.15■□□□□ 0.02
LIMK1P53667 AL596276.2-201ENST00000447525 331 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC15.15■□□□□ 0.02
LIMK1P53667 GAPDHP40-201ENST00000505218 1006 ntBASIC15.15■□□□□ 0.02
LIMK1P53667 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
LIMK1P53667 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 TEF-201ENST00000266304 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.15■□□□□ 0.02
LIMK1P53667 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.15■□□□□ 0.02
LIMK1P53667 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
LIMK1P53667 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
LIMK1P53667 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC15.14■□□□□ 0.01
LIMK1P53667 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 PPP3CB-201ENST00000342558 2418 ntTSL 5 BASIC15.14■□□□□ 0.01
LIMK1P53667 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 PON3-201ENST00000265627 1105 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC15.14■□□□□ 0.01
LIMK1P53667 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC15.14■□□□□ 0.01
LIMK1P53667 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 AC022217.1-201ENST00000521069 738 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.14■□□□□ 0.01
LIMK1P53667 PPP1R32-205ENST00000538185 1107 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC15.14■□□□□ 0.01
LIMK1P53667 AL161670.2-201ENST00000557650 1227 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 MIR3147-201ENST00000577811 66 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC15.14■□□□□ 0.01
LIMK1P53667 AL133499.1-201ENST00000596207 608 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 ECM1P1-201ENST00000604092 1279 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 PRRC2B-210ENST00000638390 1084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 AC073347.1-201ENST00000421633 2643 ntBASIC15.14■□□□□ 0.01
LIMK1P53667 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 BNIP1-201ENST00000231668 1339 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.14■□□□□ 0.01
LIMK1P53667 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIMK1P53667 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
LIMK1P53667 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
LIMK1P53667 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIMK1P53667 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC15.13■□□□□ 0.01
LIMK1P53667 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.13■□□□□ 0.01
LIMK1P53667 LHFPL3-201ENST00000401970 1378 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIMK1P53667 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC15.13■□□□□ 0.01
LIMK1P53667 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIMK1P53667 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 79.4 ms