Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.98□□□□□ -0.01
HNF4AP41235 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
HNF4AP41235 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
HNF4AP41235 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC14.97□□□□□ -0.01
HNF4AP41235 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.97□□□□□ -0.01
HNF4AP41235 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 AC097376.2-205ENST00000610159 5334 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC14.97□□□□□ -0.01
HNF4AP41235 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 MAEL-201ENST00000367870 1831 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC14.97□□□□□ -0.01
HNF4AP41235 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.97□□□□□ -0.01
HNF4AP41235 PKIG-203ENST00000372887 769 ntTSL 3 BASIC14.97□□□□□ -0.01
HNF4AP41235 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 GNAQP1-201ENST00000444815 1067 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC14.97□□□□□ -0.01
HNF4AP41235 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.97□□□□□ -0.01
HNF4AP41235 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 AL928654.2-201ENST00000551271 2279 ntTSL 3 BASIC14.97□□□□□ -0.01
HNF4AP41235 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
HNF4AP41235 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC14.97□□□□□ -0.01
HNF4AP41235 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.96□□□□□ -0.01
HNF4AP41235 POLL-217ENST00000628479 1953 ntTSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HNF4AP41235 AIFM2-202ENST00000373248 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC14.96□□□□□ -0.01
HNF4AP41235 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 CICP11-201ENST00000434745 2827 ntBASIC14.96□□□□□ -0.01
HNF4AP41235 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.96□□□□□ -0.01
HNF4AP41235 HMGN1P19-201ENST00000436976 333 ntBASIC14.96□□□□□ -0.01
HNF4AP41235 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.96□□□□□ -0.01
HNF4AP41235 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
HNF4AP41235 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.96□□□□□ -0.01
HNF4AP41235 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.96□□□□□ -0.01
HNF4AP41235 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
HNF4AP41235 SPCS2P1-201ENST00000561636 679 ntBASIC14.96□□□□□ -0.01
HNF4AP41235 AC000095.1-201ENST00000603208 874 ntBASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms