Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 AC025279.2-201ENST00000569730 653 ntBASIC16.18■□□□□ 0.18
BDNFP23560 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.18■□□□□ 0.18
BDNFP23560 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.18■□□□□ 0.18
BDNFP23560 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 AC112693.3-201ENST00000624819 1983 ntBASIC16.18■□□□□ 0.18
BDNFP23560 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC16.18■□□□□ 0.18
BDNFP23560 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
BDNFP23560 AL138709.1-201ENST00000614840 1693 ntBASIC16.18■□□□□ 0.18
BDNFP23560 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
BDNFP23560 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 AL359258.3-201ENST00000622910 2331 ntBASIC16.17■□□□□ 0.18
BDNFP23560 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 RPS15-201ENST00000233609 534 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
BDNFP23560 GZMB-202ENST00000382540 816 ntTSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 AC104457.1-201ENST00000401024 814 ntBASIC16.17■□□□□ 0.18
BDNFP23560 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 RPS2P32-201ENST00000439199 892 ntBASIC16.17■□□□□ 0.18
BDNFP23560 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.17■□□□□ 0.18
BDNFP23560 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.17■□□□□ 0.18
BDNFP23560 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.17■□□□□ 0.18
BDNFP23560 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.17■□□□□ 0.18
BDNFP23560 AP000812.2-201ENST00000538934 718 ntBASIC16.17■□□□□ 0.18
BDNFP23560 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.17■□□□□ 0.18
BDNFP23560 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 KRT90P-201ENST00000549264 1064 ntBASIC16.17■□□□□ 0.18
BDNFP23560 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.17■□□□□ 0.18
BDNFP23560 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 RPS15-205ENST00000586686 562 ntTSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 RPS15-208ENST00000591804 711 ntTSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 LRRC59-203ENST00000576448 1531 ntBASIC16.17■□□□□ 0.18
BDNFP23560 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
BDNFP23560 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
BDNFP23560 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
BDNFP23560 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
BDNFP23560 TMBIM7P-203ENST00000641617 1718 ntBASIC16.16■□□□□ 0.18
BDNFP23560 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.16■□□□□ 0.18
BDNFP23560 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 NFIC-211ENST00000641145 8399 ntBASIC16.16■□□□□ 0.18
BDNFP23560 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 ABCB9-216ENST00000542678 6051 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 REXO1L5P-201ENST00000622260 2098 ntBASIC16.16■□□□□ 0.18
BDNFP23560 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC16.16■□□□□ 0.18
BDNFP23560 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 BNIP3P42-201ENST00000454982 569 ntBASIC16.16■□□□□ 0.18
BDNFP23560 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.16■□□□□ 0.18
BDNFP23560 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
BDNFP23560 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC16.16■□□□□ 0.18
BDNFP23560 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC16.16■□□□□ 0.18
BDNFP23560 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.16■□□□□ 0.18
BDNFP23560 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
BDNFP23560 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms