Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 EHMT2-204ENST00000395728 4129 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 MORC4-202ENST00000355610 3834 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GPRC5C-202ENST00000392627 2988 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 LILRB5-203ENST00000449561 2137 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CDK2AP1-205ENST00000542174 1812 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ZNF362-201ENST00000373428 2936 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 METTL13-202ENST00000362019 3022 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 RBP1-203ENST00000483943 1935 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 RAP1GAP-211ENST00000495204 2489 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PDZD7-206ENST00000619208 4135 ntAPPRIS P1 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 CDK20-202ENST00000336654 2176 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 RPS6KA4-201ENST00000334205 3119 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PLA2G16-201ENST00000323646 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ARPC5-201ENST00000294742 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 MAP3K21-202ENST00000366623 3910 ntAPPRIS ALT2 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 PYROXD2-201ENST00000370575 2028 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ZFP2-201ENST00000361362 2429 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC11.64□□□□□ -0.55
HLA-DQA1P01909 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 ARSH-201ENST00000381130 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 BEND6-203ENST00000370748 3497 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 FLJ40288-201ENST00000332558 1998 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TRH-202ENST00000507066 1580 ntAPPRIS ALT1 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 SOX21-AS1-201ENST00000438290 3287 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 CCDC43-203ENST00000588210 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 PEX5L-215ENST00000485199 2992 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 AP1B1-208ENST00000432560 4146 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TMCC2-201ENST00000329800 2818 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 GRIK4-202ENST00000438375 4214 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 KRT18P56-201ENST00000507275 550 ntBASIC11.63□□□□□ -0.55
HLA-DQA1P01909 AC107918.2-201ENST00000530817 355 ntBASIC11.63□□□□□ -0.55
HLA-DQA1P01909 FICD-205ENST00000552758 603 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 GZMM-202ENST00000592501 941 ntTSL 3 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 IFNA6-202ENST00000380210 1544 ntAPPRIS P1 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 GABPA-202ENST00000400075 4814 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TP73-211ENST00000604074 4806 ntTSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 FURIN-206ENST00000610579 4191 ntAPPRIS P1 TSL 5 BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 RCAN3-207ENST00000538532 2640 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 PABPC1-201ENST00000318607 3485 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 FAM167A-201ENST00000284486 4094 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 ARHGEF1-202ENST00000347545 3091 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 DPH6-AS1-201ENST00000501169 1477 ntTSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 TRIM65-201ENST00000269383 3439 ntAPPRIS P1 TSL 1 (best) BASIC11.63□□□□□ -0.55
HLA-DQA1P01909 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC11.63□□□□□ -0.55
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms