Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 SERF2-217ENST00000630046 862 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 DNAJC5-201ENST00000360864 5213 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
VPS29Q9UBQ0 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 DCAKD-201ENST00000310604 2122 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 REXO1L4P-201ENST00000605109 1937 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 OR2I1P-210ENST00000642037 4691 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 NF2-209ENST00000403999 2999 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 AC055876.3-201ENST00000431496 288 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 MEIS3P1-201ENST00000495167 958 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 AC009407.1-201ENST00000568958 598 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 AC138649.4-201ENST00000612222 287 ntBASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 WFIKKN2-202ENST00000426127 2193 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
VPS29Q9UBQ0 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 FMNL1-206ENST00000587489 2487 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 FAM45BP-202ENST00000592932 1624 ntBASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 ZNF563-201ENST00000293725 2754 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
VPS29Q9UBQ0 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 PRR29-204ENST00000577953 565 ntTSL 4 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 AL390754.1-201ENST00000619088 582 ntBASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.05
VPS29Q9UBQ0 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 41.7 ms