Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 NR2E3-203ENST00000621098 2064 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AL442647.2-201ENST00000429864 857 ntBASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AC004066.1-201ENST00000502488 802 ntBASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AC124283.3-201ENST00000570869 594 ntBASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CTBP2P3-201ENST00000585629 1255 ntBASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 RER1-203ENST00000378513 3000 ntTSL 3 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 AC007787.1-201ENST00000588095 1583 ntBASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CDR2L-201ENST00000337231 3536 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMC4Q9NTJ3 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 C1QBPP1-201ENST00000400117 770 ntBASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TMEM261P1-201ENST00000604899 340 ntBASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PPP2R5D-208ENST00000485511 3044 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 PCDHGB8P-201ENST00000502926 1973 ntBASIC19.72■□□□□ 0.75
SMC4Q9NTJ3 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 KCNG3-202ENST00000394973 3656 ntAPPRIS ALT1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC19.71■□□□□ 0.75
SMC4Q9NTJ3 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms