Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 C3orf38-204ENST00000486971 1259 ntTSL 2 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 C15orf59-AS1-202ENST00000615095 1224 ntTSL 5 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC19.33■□□□□ 0.68
SHANK3Q9BYB0 CYP51A1P3-201ENST00000400072 1428 ntBASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 LINC00665-206ENST00000590622 1749 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 JKAMP-207ENST00000554271 2137 ntTSL 2 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 MYL7-209ENST00000458240 791 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 RN7SL81P-201ENST00000493781 261 ntBASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 OSMR-AS1-202ENST00000512519 837 ntTSL 2 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 AP001527.2-201ENST00000614441 631 ntBASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 UBA6-202ENST00000420827 1664 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 AL513523.2-202ENST00000427283 2040 ntBASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 C11orf49-204ENST00000395460 1916 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 RUBCNL-212ENST00000631139 1948 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 SMYD1-203ENST00000444564 1816 ntTSL 5 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 AC007292.2-201ENST00000593524 1812 ntBASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SHANK3Q9BYB0 SLC25A19-205ENST00000442286 1496 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 CHCHD2-201ENST00000395422 901 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC027237.1-201ENST00000560942 655 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 DGAT2L7P-201ENST00000602462 744 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC009884.2-201ENST00000603110 324 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC009084.3-201ENST00000623356 437 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 FAS-202ENST00000352159 1722 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 HSD17B6-207ENST00000555805 1722 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 CRB3-201ENST00000308243 631 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AL357563.1-201ENST00000404728 395 ntBASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ANO1-AS2-202ENST00000533327 498 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 NEU3-207ENST00000534628 746 ntTSL 2 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 TPM1-223ENST00000560445 485 ntTSL 3 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ROPN1-211ENST00000620893 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SHANK3Q9BYB0 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 AL627231.1-201ENST00000394467 1125 ntBASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 AC004973.1-201ENST00000413240 635 ntTSL 3 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 FAU-202ENST00000434372 533 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 AL139008.1-201ENST00000437894 228 ntBASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 AC129102.1-201ENST00000535755 525 ntTSL 4 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 FAM104A-204ENST00000580032 451 ntTSL 3 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC19.3■□□□□ 0.68
SHANK3Q9BYB0 SALL4P5-201ENST00000419001 1760 ntBASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms