Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 AC007950.2-201ENST00000615045 2347 ntBASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4AQ9BY43 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 MROH4P-201ENST00000431302 1578 ntBASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 CROCCP4-201ENST00000457096 498 ntBASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AHRR-211ENST00000515206 462 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 MIR6775-201ENST00000617557 69 ntBASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SSR4P1-203ENST00000599569 2260 ntBASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4AQ9BY43 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 PID1-202ENST00000392054 2745 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 LINC02199-201ENST00000506655 2702 ntBASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 MPV17-206ENST00000402722 827 ntTSL 3 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 USB1-202ENST00000423271 1217 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 AC245100.3-201ENST00000441281 285 ntBASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 AC008687.7-202ENST00000637404 953 ntBASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4AQ9BY43 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 RNA5SP412-201ENST00000516234 123 ntBASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 ANAPC15-214ENST00000543587 883 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
CHMP4AQ9BY43 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.53■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms