Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 AC015910.1-201ENST00000579400 975 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 BRD1-205ENST00000457780 4997 ntTSL 5 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC11.6□□□□□ -0.55
LINC00477Q96M19 AJ011931.1-201ENST00000618749 2492 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 SLC16A1-207ENST00000538576 4374 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC11.6□□□□□ -0.55
LINC00477Q96M19 CETN4P-206ENST00000642099 2168 ntBASIC11.6□□□□□ -0.55
LINC00477Q96M19 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 CICP11-201ENST00000434745 2827 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 CNOT8-201ENST00000285896 2528 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 ZNF777-201ENST00000247930 3233 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 AL022342.1-201ENST00000400363 863 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 MIR4469-201ENST00000583919 79 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 AL589739.1-201ENST00000607720 493 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 HOTTIP_1.1-201ENST00000620415 57 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 MVK-207ENST00000539575 2747 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 Z97205.2-201ENST00000564697 1639 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 REXO1L2P-201ENST00000425429 2069 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RPGRIP1-210ENST00000556336 2955 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 AL122018.1-201ENST00000446607 2310 ntBASIC11.59□□□□□ -0.55
LINC00477Q96M19 VARS2-211ENST00000541562 3566 ntTSL 2 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 B3GNT3-202ENST00000595387 1349 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
LINC00477Q96M19 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
LINC00477Q96M19 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.55
LINC00477Q96M19 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.55
LINC00477Q96M19 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC11.58□□□□□ -0.55
LINC00477Q96M19 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
LINC00477Q96M19 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
LINC00477Q96M19 AC012508.2-201ENST00000567613 1472 ntBASIC11.58□□□□□ -0.56
LINC00477Q96M19 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 PUS1-202ENST00000376649 4094 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 PCDHGB8P-201ENST00000502926 1973 ntBASIC11.58□□□□□ -0.56
LINC00477Q96M19 STARD8-201ENST00000252336 4862 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
LINC00477Q96M19 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC11.58□□□□□ -0.56
LINC00477Q96M19 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 77.7 ms