Protein–RNA interactions for Protein: Q96BQ3

TRIM43, Tripartite motif-containing protein 43, humanhuman

Predicted RBP Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM43Q96BQ3 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 PCBP2-202ENST00000359462 1814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 AC011840.2-201ENST00000563063 1520 ntBASIC16.45■□□□□ 0.22
TRIM43Q96BQ3 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 SPDYE6-201ENST00000563237 1691 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 RBM38-204ENST00000371219 760 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 SETD7-203ENST00000406354 1127 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 LINC00313-205ENST00000427188 967 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 BUD31-205ENST00000456893 512 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AC008723.1-201ENST00000506922 207 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 CCNC-217ENST00000523985 958 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AC005962.1-201ENST00000584100 773 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AC009264.1-206ENST00000592183 534 ntTSL 4 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 Z98259.2-201ENST00000641583 609 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 MAGEB2-201ENST00000378988 1610 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AL596087.1-201ENST00000400979 1969 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AL157414.3-201ENST00000624276 1954 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 FAM69C-202ENST00000400291 1329 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 FER1L4-210ENST00000615531 5998 ntBASIC16.44■□□□□ 0.22
TRIM43Q96BQ3 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 MYADM-202ENST00000391768 1492 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AC078875.1-201ENST00000431907 724 ntBASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AL365295.1-203ENST00000435322 566 ntTSL 4 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AL157792.1-201ENST00000488281 530 ntBASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 FXYD2-205ENST00000528014 672 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AC093525.1-201ENST00000569317 596 ntAPPRIS P1 TSL 3 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AL161773.1-201ENST00000624845 863 ntBASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 AGGF1P2-201ENST00000426656 2106 ntBASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 MST1L-201ENST00000442552 2185 ntBASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 DEF8-219ENST00000567874 1554 ntTSL 2 BASIC16.43■□□□□ 0.22
TRIM43Q96BQ3 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 52.4 ms