Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 KIAA2026-201ENST00000381461 6884 ntTSL 5 BASIC17.54■□□□□ 0.4
ERCC4Q92889 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC17.54■□□□□ 0.4
ERCC4Q92889 SSTR2-201ENST00000357585 7683 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
ERCC4Q92889 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 SIDT1-201ENST00000264852 5080 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
ERCC4Q92889 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
ERCC4Q92889 PMPCB-201ENST00000249269 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.53■□□□□ 0.4
ERCC4Q92889 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 LITAF-210ENST00000571976 548 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 LITAF-214ENST00000574703 486 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 ARL10-201ENST00000310389 10845 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC17.53■□□□□ 0.4
ERCC4Q92889 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 PCDHGB8P-201ENST00000502926 1973 ntBASIC17.53■□□□□ 0.4
ERCC4Q92889 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC17.53■□□□□ 0.4
ERCC4Q92889 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
ERCC4Q92889 PRKAG2-215ENST00000492843 2699 ntTSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
ERCC4Q92889 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
ERCC4Q92889 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 COL7A1-201ENST00000328333 9276 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC4Q92889 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
ERCC4Q92889 ITPK1-207ENST00000555495 3035 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC4Q92889 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 SPDYE17-201ENST00000412399 783 ntBASIC17.52■□□□□ 0.4
ERCC4Q92889 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC17.52■□□□□ 0.4
ERCC4Q92889 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC4Q92889 YBX1P5-201ENST00000509441 847 ntBASIC17.52■□□□□ 0.4
ERCC4Q92889 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC17.52■□□□□ 0.4
ERCC4Q92889 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.52■□□□□ 0.4
ERCC4Q92889 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC17.52■□□□□ 0.4
ERCC4Q92889 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
ERCC4Q92889 EEF1AKMT3-201ENST00000300209 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 MTHFR-210ENST00000641407 2387 ntBASIC17.52■□□□□ 0.39
ERCC4Q92889 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 XPNPEP1-218ENST00000502935 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 MLXIPL-205ENST00000429400 3173 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.52■□□□□ 0.39
ERCC4Q92889 KCTD3-201ENST00000259154 3931 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
ERCC4Q92889 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC17.51■□□□□ 0.39
ERCC4Q92889 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 MAP3K11-208ENST00000530153 2830 ntTSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
ERCC4Q92889 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.51■□□□□ 0.39
ERCC4Q92889 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.51■□□□□ 0.39
ERCC4Q92889 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms