Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 FAM58DP-201ENST00000428076 619 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AL512356.2-201ENST00000546955 174 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AL079307.3-201ENST00000556114 283 ntBASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 MAPKAPK5-206ENST00000550735 11349 ntAPPRIS ALT1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AC015802.6-201ENST00000640006 5654 ntAPPRIS P1 TSL 2 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.51□□□□□ -0.25
CCDC54Q8NEL0 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PKIA-202ENST00000396418 4163 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 OR2C3-204ENST00000641802 8509 ntAPPRIS P1 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 GPS2P2-201ENST00000430745 888 ntBASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MTND6P24-201ENST00000440466 518 ntBASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AC023141.5-201ENST00000458585 616 ntBASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MIR4469-201ENST00000583919 79 ntBASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AZGP1-202ENST00000411734 2027 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ABCC6-208ENST00000622290 4941 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ZNF862-201ENST00000223210 6950 ntAPPRIS P1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 DAAM2-202ENST00000398904 6224 ntAPPRIS ALT1 TSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PXDN-201ENST00000252804 6808 ntAPPRIS P1 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 NYAP1-201ENST00000300179 3581 ntAPPRIS P1 TSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AMT-224ENST00000635808 1610 ntTSL 5 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC13.5□□□□□ -0.25
CCDC54Q8NEL0 AICDA-201ENST00000229335 2819 ntAPPRIS P2 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 DDX21-202ENST00000620315 4829 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.49□□□□□ -0.25
CCDC54Q8NEL0 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 56.8 ms