Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SDC3-201ENST00000336798 6392 ntTSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 GRID2-201ENST00000282020 6117 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ELN-234ENST00000621115 3452 ntAPPRIS ALT2 TSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 UAP1L1-201ENST00000360271 3201 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 TEX35-204ENST00000367642 2452 ntAPPRIS ALT2 TSL 5 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 DOT1L-201ENST00000398665 7436 ntAPPRIS P1 TSL 1 (best) BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 SPACA9-202ENST00000356311 2243 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC9.54□□□□□ -0.88
LINC00643Q86TS7 ELN-222ENST00000458204 3147 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 RPS6KC1-209ENST00000615329 4022 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 NAALADL1-201ENST00000340252 2376 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AL356966.1-201ENST00000454752 2367 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 HERC2P10-201ENST00000570209 2393 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 SIGLEC12-201ENST00000291707 2121 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 NFAT5-209ENST00000567239 6376 ntAPPRIS ALT1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 CLCN4-203ENST00000421085 6534 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 PKD1P6-NPIPP1-202ENST00000605794 2902 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 DPY19L2P2-205ENST00000439473 3994 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AC026992.2-203ENST00000563004 2419 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 REXO5-208ENST00000564274 2447 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 GPR161-208ENST00000537209 8256 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 VRK3-201ENST00000316763 1938 ntAPPRIS P3 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 ALDH1A3-202ENST00000346623 3104 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 TNRC18P1-201ENST00000502875 3650 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 TTC8-203ENST00000346301 2058 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 OR2A1-AS1-201ENST00000462305 773 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MIR4492-201ENST00000581627 80 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 PARP1-210ENST00000629232 477 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 ABBA01031674.1-201ENST00000635145 728 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 HLA-B-256ENST00000639848 1089 ntBASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MKNK1-201ENST00000341183 2612 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 TARS2-203ENST00000369054 1998 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MYLK-204ENST00000360304 7738 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 PTCD1-201ENST00000292478 5582 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MTMR3-202ENST00000333027 8906 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 NR1H3-217ENST00000467728 2731 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 SCAMP5-202ENST00000425597 3411 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 SLIT2-204ENST00000504154 6390 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 MDM1-205ENST00000430606 2170 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 PDE2A-218ENST00000540345 3027 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 AP000347.1-201ENST00000417194 5004 ntTSL 1 (best) BASIC9.53□□□□□ -0.88
LINC00643Q86TS7 FARP1-201ENST00000319562 10262 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 SESN2-201ENST00000253063 3453 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 DTX1-201ENST00000257600 3455 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 CCNI-201ENST00000237654 2772 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 ABAT-215ENST00000569156 1911 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 INSC-207ENST00000528567 2237 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 OGFR-202ENST00000370461 4506 ntAPPRIS ALT2 TSL 2 BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 TP53TG5-201ENST00000372726 2374 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 ARAF-201ENST00000290277 2504 ntAPPRIS ALT1 TSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 FLAD1-207ENST00000368433 2656 ntTSL 2 BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 SLC12A6-205ENST00000458406 4425 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC9.52□□□□□ -0.88
LINC00643Q86TS7 TRMT2B-206ENST00000545398 3106 ntAPPRIS P3 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 KLHL13-204ENST00000371882 3256 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 FLNA-204ENST00000369856 8241 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 ZNF410-201ENST00000324593 2293 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 AC005695.1-201ENST00000574307 5672 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 DFFB-205ENST00000378209 3028 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
LINC00643Q86TS7 WTH3DI-201ENST00000623617 3032 ntAPPRIS P1 BASIC9.52□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms