Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 AC133539.2-201ENST00000604757 467 ntBASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 GPR39-203ENST00000622084 900 ntTSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 AL645728.2-202ENST00000641679 227 ntBASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 SETD1B-203ENST00000604567 5969 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 BANP-201ENST00000286122 2368 ntTSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 SCUBE1-202ENST00000360835 9808 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 ABR-205ENST00000544583 5595 ntTSL 2 BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NUP54Q7Z3B4 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 GSN-206ENST00000394353 2311 ntTSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 MBP-202ENST00000355994 2772 ntTSL 5 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 KRT8P44-201ENST00000441609 1350 ntBASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AC026410.3-201ENST00000514280 936 ntBASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 CTBP2P3-201ENST00000585629 1255 ntBASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 AC093813.1-201ENST00000605066 256 ntBASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
NUP54Q7Z3B4 H6PD-203ENST00000602477 5590 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 DRD5P1-201ENST00000456605 1438 ntBASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AP006294.1-201ENST00000415407 339 ntBASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 VDAC1P7-201ENST00000462417 847 ntBASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC14.25□□□□□ -0.13
NUP54Q7Z3B4 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms