Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 MRPL34-201ENST00000252602 968 ntAPPRIS P2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 OR2J1-201ENST00000377171 1273 ntAPPRIS P1 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 NME6-203ENST00000415644 849 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 HLA-K-203ENST00000430151 1046 ntBASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AC006033.1-201ENST00000440505 426 ntBASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 CNN2P10-201ENST00000443067 918 ntBASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 CYBA-208ENST00000567174 1085 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 EEF1DP1-201ENST00000585891 896 ntBASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AC005695.3-201ENST00000614522 232 ntBASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
RNFT1Q5M7Z0 REXO1L5P-201ENST00000622260 2098 ntBASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 LINC02273-201ENST00000499452 1592 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CICP11-201ENST00000434745 2827 ntBASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 DOC2GP-204ENST00000639052 2548 ntBASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 IGHV3-53-201ENST00000390627 571 ntAPPRIS P1 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 AC104457.1-201ENST00000401024 814 ntBASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 POM121L8P-201ENST00000417732 1281 ntBASIC13.79□□□□□ -0.2
RNFT1Q5M7Z0 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 55.4 ms