Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.52■□□□□ 0.24
VCPP55072 AC018892.3-201ENST00000623986 2499 ntBASIC16.52■□□□□ 0.24
VCPP55072 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.52■□□□□ 0.24
VCPP55072 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
VCPP55072 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.52■□□□□ 0.24
VCPP55072 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 FXNP2-201ENST00000411625 547 ntBASIC16.52■□□□□ 0.24
VCPP55072 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.52■□□□□ 0.24
VCPP55072 BCRP2-202ENST00000447763 634 ntBASIC16.52■□□□□ 0.24
VCPP55072 RPL13AP20-201ENST00000459725 609 ntBASIC16.52■□□□□ 0.24
VCPP55072 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.52■□□□□ 0.24
VCPP55072 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 BCRP6-201ENST00000510112 632 ntBASIC16.52■□□□□ 0.24
VCPP55072 BCRP7-201ENST00000511549 544 ntBASIC16.52■□□□□ 0.24
VCPP55072 TP53AIP1-205ENST00000531399 806 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 RIT1-205ENST00000539040 919 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.52■□□□□ 0.24
VCPP55072 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC16.52■□□□□ 0.24
VCPP55072 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC16.52■□□□□ 0.24
VCPP55072 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.52■□□□□ 0.24
VCPP55072 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.52■□□□□ 0.24
VCPP55072 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
VCPP55072 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.23
VCPP55072 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC16.52■□□□□ 0.23
VCPP55072 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC16.52■□□□□ 0.23
VCPP55072 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
VCPP55072 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 CENPT-202ENST00000440851 2200 ntAPPRIS P2 TSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 TKT-202ENST00000423516 2075 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 AL592464.1-201ENST00000429389 429 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.51■□□□□ 0.23
VCPP55072 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 NAT9-224ENST00000583757 583 ntTSL 3 BASIC16.51■□□□□ 0.23
VCPP55072 AC025048.3-201ENST00000590609 569 ntBASIC16.51■□□□□ 0.23
VCPP55072 AC016629.1-201ENST00000596579 586 ntBASIC16.51■□□□□ 0.23
VCPP55072 AC010328.2-201ENST00000597698 1111 ntBASIC16.51■□□□□ 0.23
VCPP55072 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 AL118558.3-201ENST00000607414 1079 ntBASIC16.51■□□□□ 0.23
VCPP55072 AC005702.4-201ENST00000618393 416 ntBASIC16.51■□□□□ 0.23
VCPP55072 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 AC138035.3-201ENST00000622706 2791 ntBASIC16.51■□□□□ 0.23
VCPP55072 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 ILF3-AS1-201ENST00000591501 1983 ntBASIC16.51■□□□□ 0.23
VCPP55072 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
VCPP55072 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
VCPP55072 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
VCPP55072 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.5■□□□□ 0.23
VCPP55072 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 BID-213ENST00000615414 2236 ntTSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 TNRC18P2-201ENST00000417666 2714 ntBASIC16.5■□□□□ 0.23
VCPP55072 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
VCPP55072 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC16.5■□□□□ 0.23
VCPP55072 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
VCPP55072 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms