Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX2P48431 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SOX2P48431 KCNH4-201ENST00000264661 3920 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 WNT2B-202ENST00000369684 3818 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 ADGRB2-205ENST00000398547 4857 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SOX2P48431 SUGP2-214ENST00000600377 4752 ntAPPRIS ALT2 TSL 2 BASIC13.64□□□□□ -0.23
SOX2P48431 ACIN1-203ENST00000357481 2563 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC13.64□□□□□ -0.23
SOX2P48431 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC13.64□□□□□ -0.23
SOX2P48431 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.64□□□□□ -0.23
SOX2P48431 UXT-AS1-201ENST00000590504 1525 ntBASIC13.64□□□□□ -0.23
SOX2P48431 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
SOX2P48431 TRIM13-202ENST00000378182 7249 ntAPPRIS P3 TSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
SOX2P48431 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
SOX2P48431 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 FCHSD2-204ENST00000409418 3154 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 DLGAP1-204ENST00000400149 5203 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 PCDHA11-201ENST00000398640 6115 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 PRKD2-202ENST00000433867 3321 ntAPPRIS P3 TSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 MIR346-201ENST00000362234 95 ntBASIC13.63□□□□□ -0.23
SOX2P48431 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 RPL5P21-201ENST00000404620 815 ntBASIC13.63□□□□□ -0.23
SOX2P48431 AC136604.1-201ENST00000418535 575 ntBASIC13.63□□□□□ -0.23
SOX2P48431 HNRNPA1P28-201ENST00000424481 961 ntBASIC13.63□□□□□ -0.23
SOX2P48431 FAM8A3P-201ENST00000427218 844 ntBASIC13.63□□□□□ -0.23
SOX2P48431 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC13.63□□□□□ -0.23
SOX2P48431 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 FXR1-221ENST00000491674 365 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
SOX2P48431 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC13.63□□□□□ -0.23
SOX2P48431 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.63□□□□□ -0.23
SOX2P48431 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC13.63□□□□□ -0.23
SOX2P48431 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC13.63□□□□□ -0.23
SOX2P48431 AC092902.6-201ENST00000641783 218 ntBASIC13.63□□□□□ -0.23
SOX2P48431 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.63□□□□□ -0.23
SOX2P48431 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC13.63□□□□□ -0.23
SOX2P48431 PNPLA5-201ENST00000216177 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 ATP13A2-202ENST00000341676 3681 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 REPS1-221ENST00000626459 3665 ntTSL 5 BASIC13.63□□□□□ -0.23
SOX2P48431 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 PCDHGB7-201ENST00000398594 4765 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 CLEC12A-AS1-201ENST00000420905 3956 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
SOX2P48431 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
SOX2P48431 AP3S2-216ENST00000617003 1561 ntBASIC13.62□□□□□ -0.23
SOX2P48431 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
SOX2P48431 TRPM1-203ENST00000542188 6004 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 ZNF259P1-201ENST00000407656 1365 ntBASIC13.62□□□□□ -0.23
SOX2P48431 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 PCDHGB8P-201ENST00000502926 1973 ntBASIC13.62□□□□□ -0.23
SOX2P48431 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX2P48431 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 STX1B-201ENST00000215095 4697 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
SOX2P48431 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC13.62□□□□□ -0.23
SOX2P48431 MED15P5-201ENST00000423150 992 ntBASIC13.62□□□□□ -0.23
SOX2P48431 KRT18P3-201ENST00000451602 1288 ntBASIC13.62□□□□□ -0.23
SOX2P48431 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 AC079140.1-201ENST00000508039 487 ntBASIC13.62□□□□□ -0.23
SOX2P48431 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC13.62□□□□□ -0.23
SOX2P48431 KRT8P48-201ENST00000515599 1220 ntBASIC13.62□□□□□ -0.23
SOX2P48431 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC13.62□□□□□ -0.23
SOX2P48431 AC026120.1-201ENST00000611536 926 ntBASIC13.62□□□□□ -0.23
SOX2P48431 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
SOX2P48431 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.62□□□□□ -0.23
SOX2P48431 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms