Protein–RNA interactions for Protein: P19447

ERCC3, TFIIH basal transcription factor complex helicase XPB subunit, humanhuman

Predictions only

Length 782 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC3P19447 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC3P19447 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC17.84■□□□□ 0.45
ERCC3P19447 AP003392.4-202ENST00000526453 1359 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC3P19447 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 FAM197Y7-201ENST00000432892 766 ntBASIC17.84■□□□□ 0.45
ERCC3P19447 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC3P19447 AC023310.1-201ENST00000554836 735 ntBASIC17.84■□□□□ 0.45
ERCC3P19447 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC17.84■□□□□ 0.45
ERCC3P19447 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.84■□□□□ 0.45
ERCC3P19447 AC084346.2-201ENST00000607097 949 ntBASIC17.84■□□□□ 0.45
ERCC3P19447 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC17.84■□□□□ 0.45
ERCC3P19447 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
ERCC3P19447 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.84■□□□□ 0.45
ERCC3P19447 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
ERCC3P19447 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
ERCC3P19447 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.84■□□□□ 0.45
ERCC3P19447 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
ERCC3P19447 AC022188.1-201ENST00000620960 1664 ntBASIC17.83■□□□□ 0.45
ERCC3P19447 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC3P19447 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC3P19447 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.45
ERCC3P19447 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC3P19447 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC3P19447 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
ERCC3P19447 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
ERCC3P19447 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 AC006001.1-201ENST00000325130 474 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC17.83■□□□□ 0.44
ERCC3P19447 ZNF767P-206ENST00000513792 565 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC17.83■□□□□ 0.44
ERCC3P19447 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC17.83■□□□□ 0.44
ERCC3P19447 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC3P19447 AC078819.1-201ENST00000547454 765 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 AC012085.1-201ENST00000548270 765 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
ERCC3P19447 MIR3615-201ENST00000581999 87 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 AC145423.3-201ENST00000615987 467 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 TOM1L1-201ENST00000348161 1895 ntTSL 2 BASIC17.83■□□□□ 0.44
ERCC3P19447 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
ERCC3P19447 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 FLII-221ENST00000578558 2377 ntTSL 5 BASIC17.83■□□□□ 0.44
ERCC3P19447 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
ERCC3P19447 AL138799.1-201ENST00000448213 1675 ntBASIC17.83■□□□□ 0.44
ERCC3P19447 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.83■□□□□ 0.44
ERCC3P19447 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
ERCC3P19447 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC17.82■□□□□ 0.44
ERCC3P19447 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 AC112504.1-201ENST00000623415 1841 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
ERCC3P19447 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 AC144831.1-201ENST00000573312 2656 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.82■□□□□ 0.44
ERCC3P19447 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 LHB-201ENST00000221421 514 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 CDK2-202ENST00000354056 1260 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
ERCC3P19447 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 MIR1247-201ENST00000408206 136 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC17.82■□□□□ 0.44
ERCC3P19447 LYRM9-204ENST00000503642 432 ntTSL 3 BASIC17.82■□□□□ 0.44
ERCC3P19447 KRT18P25-201ENST00000508931 1278 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 FAM86HP-204ENST00000513466 959 ntBASIC17.82■□□□□ 0.44
ERCC3P19447 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.82■□□□□ 0.44
ERCC3P19447 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC17.82■□□□□ 0.44
ERCC3P19447 LINC02028-216ENST00000609015 732 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.82■□□□□ 0.44
ERCC3P19447 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC17.82■□□□□ 0.44
ERCC3P19447 WARS-232ENST00000556645 2508 ntTSL 5 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms