Protein–RNA interactions for Protein: P16619

CCL3L1, C-C motif chemokine 3-like 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCL3L1P16619 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AC134915.1-201ENST00000426461 574 ntBASIC12.72□□□□□ -0.37
CCL3L1P16619 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AL359711.2-201ENST00000563105 872 ntBASIC12.72□□□□□ -0.37
CCL3L1P16619 AC120045.2-201ENST00000567334 178 ntBASIC12.72□□□□□ -0.37
CCL3L1P16619 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AC023157.3-201ENST00000619086 2088 ntBASIC12.72□□□□□ -0.37
CCL3L1P16619 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 AL359258.3-201ENST00000622910 2331 ntBASIC12.72□□□□□ -0.37
CCL3L1P16619 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC12.72□□□□□ -0.37
CCL3L1P16619 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCL3L1P16619 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 ROBO1-209ENST00000495273 5600 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCL3L1P16619 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC12.71□□□□□ -0.37
CCL3L1P16619 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC12.71□□□□□ -0.37
CCL3L1P16619 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCL3L1P16619 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 VEZF1-202ENST00000581208 2321 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC12.71□□□□□ -0.37
CCL3L1P16619 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCL3L1P16619 C1QBPP1-201ENST00000400117 770 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 AL442647.2-201ENST00000429864 857 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 HNRNPA1P13-201ENST00000510646 963 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 AC026410.3-201ENST00000514280 936 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC12.71□□□□□ -0.37
CCL3L1P16619 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 TMEM261P1-201ENST00000604899 340 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 WFDC1-204ENST00000613603 549 ntBASIC12.71□□□□□ -0.37
CCL3L1P16619 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.71□□□□□ -0.37
CCL3L1P16619 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCL3L1P16619 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC12.71□□□□□ -0.38
CCL3L1P16619 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC12.71□□□□□ -0.38
CCL3L1P16619 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.71□□□□□ -0.38
CCL3L1P16619 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC12.71□□□□□ -0.38
CCL3L1P16619 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC12.71□□□□□ -0.38
CCL3L1P16619 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CCL3L1P16619 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCL3L1P16619 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC12.7□□□□□ -0.38
CCL3L1P16619 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCL3L1P16619 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms