Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 IGLC1-201ENST00000390321 460 ntAPPRIS P1 BASIC15.52■□□□□ 0.08
VCANP13611 B9D1-203ENST00000395615 805 ntTSL 3 BASIC15.52■□□□□ 0.08
VCANP13611 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.52■□□□□ 0.08
VCANP13611 AGGF1P2-201ENST00000426656 2106 ntBASIC15.52■□□□□ 0.08
VCANP13611 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
VCANP13611 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC15.52■□□□□ 0.08
VCANP13611 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
VCANP13611 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC15.52■□□□□ 0.08
VCANP13611 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
VCANP13611 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 SLC9A7P1-202ENST00000556476 2239 ntBASIC15.52■□□□□ 0.07
VCANP13611 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 PLAC9-203ENST00000372270 534 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
VCANP13611 ZNRD1-203ENST00000376782 736 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
VCANP13611 ORAOV1P1-201ENST00000503108 395 ntBASIC15.52■□□□□ 0.07
VCANP13611 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.52■□□□□ 0.07
VCANP13611 CBR3-AS1-206ENST00000608632 659 ntTSL 5 BASIC15.52■□□□□ 0.07
VCANP13611 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC15.52■□□□□ 0.07
VCANP13611 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.52■□□□□ 0.07
VCANP13611 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.07
VCANP13611 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.07
VCANP13611 AC011840.2-201ENST00000563063 1520 ntBASIC15.52■□□□□ 0.07
VCANP13611 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.07
VCANP13611 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 KDF1-202ENST00000616918 1651 ntTSL 2 BASIC15.52■□□□□ 0.07
VCANP13611 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 EIF3FP3-201ENST00000434851 1086 ntBASIC15.52■□□□□ 0.07
VCANP13611 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC15.52■□□□□ 0.07
VCANP13611 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.07
VCANP13611 CTBP2P8-201ENST00000422584 1330 ntBASIC15.52■□□□□ 0.07
VCANP13611 CYTH1-201ENST00000361101 3311 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 CYTH1-202ENST00000446868 3311 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 ANKDD1A-202ENST00000395720 1518 ntTSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 HLA-DMA-203ENST00000395305 777 ntBASIC15.51■□□□□ 0.07
VCANP13611 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 CISD2-202ENST00000503643 808 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 MIR3180-2-201ENST00000581748 88 ntBASIC15.51■□□□□ 0.07
VCANP13611 AC006483.2-201ENST00000609813 515 ntBASIC15.51■□□□□ 0.07
VCANP13611 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 AC005915.1-201ENST00000624912 2018 ntBASIC15.51■□□□□ 0.07
VCANP13611 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC15.51■□□□□ 0.07
VCANP13611 SUMO1-203ENST00000392246 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 KRT18P9-201ENST00000604826 1300 ntBASIC15.51■□□□□ 0.07
VCANP13611 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
VCANP13611 SUMO1-204ENST00000409181 784 ntTSL 3 BASIC15.51■□□□□ 0.07
VCANP13611 SUMO1-207ENST00000409498 779 ntTSL 3 BASIC15.51■□□□□ 0.07
VCANP13611 AL592076.1-201ENST00000424448 303 ntBASIC15.51■□□□□ 0.07
VCANP13611 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 AC092299.1-201ENST00000632679 757 ntBASIC15.51■□□□□ 0.07
VCANP13611 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC15.51■□□□□ 0.07
VCANP13611 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
VCANP13611 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
VCANP13611 AC244394.1-201ENST00000435000 1665 ntBASIC15.51■□□□□ 0.07
VCANP13611 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC15.5■□□□□ 0.07
VCANP13611 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 PRELID3B-202ENST00000371033 943 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 GNAT1-202ENST00000433068 1224 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
VCANP13611 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC15.5■□□□□ 0.07
VCANP13611 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
VCANP13611 KRT8P31-201ENST00000504812 1408 ntBASIC15.5■□□□□ 0.07
VCANP13611 AC016396.2-201ENST00000562575 1417 ntBASIC15.5■□□□□ 0.07
VCANP13611 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.5■□□□□ 0.07
VCANP13611 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
VCANP13611 AL929302.1-201ENST00000426556 871 ntBASIC15.5■□□□□ 0.07
VCANP13611 CDK2-203ENST00000440311 1031 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 46.3 ms