Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 AGRN-210ENST00000620552 7394 ntTSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 G3BP2-202ENST00000359707 4883 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 TKT-201ENST00000296289 1931 ntTSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 OS9-207ENST00000439210 1946 ntTSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 HSPA7-201ENST00000445535 1927 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AC002056.1-201ENST00000395613 760 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AL139010.1-201ENST00000454878 894 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 RNA5SP419-201ENST00000515908 135 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 RNA5SP410-201ENST00000516285 106 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AC097359.3-201ENST00000603982 1210 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AC068137.2-201ENST00000605408 478 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 AC136759.1-202ENST00000530858 2194 ntBASIC14.14□□□□□ -0.15
CLN6Q9NWW5 TPM3-208ENST00000341485 2063 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 MEOX2-201ENST00000262041 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 TNFRSF11A-206ENST00000617039 3756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 ICA1-207ENST00000406470 2440 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 EVL-201ENST00000392920 1978 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 COL6A2-201ENST00000300527 3461 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 EHD4-201ENST00000220325 6416 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC14.14□□□□□ -0.15
CLN6Q9NWW5 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 COL6A2-202ENST00000310645 3446 ntTSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 GPAT3-201ENST00000264409 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AC084364.1-201ENST00000551967 1556 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 CYP4F24P-201ENST00000586049 1580 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 GPANK1-205ENST00000375906 2793 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 GCFC2-211ENST00000541687 4318 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AATBC-201ENST00000400385 4598 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ADAM23-202ENST00000374415 2714 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 EEF1DP4-201ENST00000446006 880 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 MAL2-202ENST00000531508 892 ntTSL 3 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 HNRNPUP1-201ENST00000554987 333 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AL138918.1-201ENST00000568306 659 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AC018845.2-201ENST00000568326 409 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 SPPL2A-201ENST00000261854 7372 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 AC113367.3-201ENST00000508316 1912 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ARHGAP23P1-201ENST00000562773 1937 ntBASIC14.13□□□□□ -0.15
CLN6Q9NWW5 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ARHGAP9-213ENST00000550288 2818 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 ATXN2L-204ENST00000382686 3739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 C1R-201ENST00000535233 2211 ntTSL 2 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CLN6Q9NWW5 EXTL1-201ENST00000374280 4015 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
CLN6Q9NWW5 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms