Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 ABCC9-203ENST00000326684 1693 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 WARS-232ENST00000556645 2508 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 CNN2P8-201ENST00000421872 913 ntBASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 AC092658.1-201ENST00000505836 891 ntBASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 AC109479.1-201ENST00000519603 624 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 NCOA1-205ENST00000406961 7289 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 ZBTB12BP-201ENST00000314232 1122 ntBASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 KRT90P-201ENST00000549264 1064 ntBASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 LBHD1-201ENST00000354588 1320 ntAPPRIS P2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.88■□□□□ 0.29
TRAIPQ9BWF2 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 MORN2-204ENST00000409665 648 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 TRIM7-203ENST00000393315 2851 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 MFF-204ENST00000353339 2186 ntTSL 5 BASIC16.87■□□□□ 0.29
TRAIPQ9BWF2 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
TRAIPQ9BWF2 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 47.1 ms