Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 VGLL4-214ENST00000451674 938 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AC026434.2-201ENST00000506094 1078 ntBASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 COX5BP1-201ENST00000507622 393 ntBASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 SLC35G4-201ENST00000588001 1017 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 AC073413.1-201ENST00000603927 732 ntBASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
PAAF1Q9BRP4 UGGT2-204ENST00000397618 1547 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC018735.1-201ENST00000437208 1502 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 GFRA2-204ENST00000518077 1503 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC015818.8-201ENST00000587907 1519 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 CLUHP2-201ENST00000426660 1303 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 TMEM141-201ENST00000290079 768 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 GHSR-202ENST00000427970 912 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC006033.1-201ENST00000440505 426 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 PRPS2-205ENST00000489404 763 ntTSL 2 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 OCEL1-213ENST00000601529 942 ntTSL 3 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 FDPS-221ENST00000612683 1198 ntAPPRIS ALT1 TSL 5 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 AL137783.1-201ENST00000623494 1896 ntBASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
PAAF1Q9BRP4 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC112693.3-201ENST00000624819 1983 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 ANKRD30BP2-201ENST00000435744 1610 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 BATF-201ENST00000286639 980 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 CRABP1-201ENST00000299529 772 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 TISP43-201ENST00000409793 538 ntTSL 4 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 CHMP2B-205ENST00000494980 1175 ntTSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 RNF41-210ENST00000552244 716 ntTSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC106820.3-201ENST00000561653 397 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC104982.3-201ENST00000581995 514 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 PPY2P-201ENST00000582808 702 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AL008638.5-201ENST00000623814 1298 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AC044839.1-204ENST00000634777 1058 ntTSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 C18orf15-201ENST00000623680 2534 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AL133338.1-201ENST00000565695 1517 ntBASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.28■□□□□ 0.2
PAAF1Q9BRP4 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 63.8 ms