Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 C20orf181-201ENST00000623918 480 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 EPB41L3-201ENST00000341928 4706 ntAPPRIS P3 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AKAP8P1-201ENST00000434743 1349 ntBASIC13.55□□□□□ -0.24
NKX3-1Q99801 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 DNER-201ENST00000341772 3260 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 RCAN2-203ENST00000371374 3327 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 CABLES2-201ENST00000279101 3785 ntAPPRIS P2 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 CYB561-201ENST00000360793 3001 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 NIN-202ENST00000324330 4364 ntTSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 SEPT7-201ENST00000350320 4350 ntAPPRIS P5 TSL 5 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.55□□□□□ -0.24
NKX3-1Q99801 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.55□□□□□ -0.24
NKX3-1Q99801 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SEMA3F-202ENST00000413852 3212 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 UXT-AS1-201ENST00000590504 1525 ntBASIC13.54□□□□□ -0.24
NKX3-1Q99801 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 TMPRSS9-201ENST00000332578 3331 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SLC43A2-201ENST00000301335 8136 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 HIPK3-203ENST00000456517 7399 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 WSCD1-202ENST00000539421 2665 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 PBXIP1-202ENST00000368463 3212 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 GPAT4-201ENST00000396987 6298 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 FAM220BP-201ENST00000377689 816 ntBASIC13.54□□□□□ -0.24
NKX3-1Q99801 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 NPRL3-212ENST00000620134 3203 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC13.54□□□□□ -0.24
NKX3-1Q99801 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC13.54□□□□□ -0.24
NKX3-1Q99801 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AC005523.2-201ENST00000601192 3568 ntTSL 4 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CD93-201ENST00000246006 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.53□□□□□ -0.24
NKX3-1Q99801 HLA-H-201ENST00000383620 1096 ntBASIC13.53□□□□□ -0.24
NKX3-1Q99801 CBR1-202ENST00000399191 838 ntTSL 3 BASIC13.53□□□□□ -0.24
NKX3-1Q99801 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC13.53□□□□□ -0.24
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms