Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 EYA4-205ENST00000430974 2364 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 INGX-202ENST00000489074 768 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 RNA5SP421-201ENST00000516864 134 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 AL390728.6-201ENST00000566446 1246 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 AC104794.3-201ENST00000566840 1248 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 AC023824.1-201ENST00000562945 2975 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 LINC02228-204ENST00000642115 2962 ntBASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 REPIN1-201ENST00000397281 3292 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 RERG-209ENST00000546331 1383 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 SLC24A3-201ENST00000328041 3929 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC116Q8IYX3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 CYP27B1-201ENST00000228606 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC116Q8IYX3 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 CPD-201ENST00000225719 9394 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 EDN3-201ENST00000311585 2655 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 APPL1-201ENST00000288266 6058 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AL158212.4-201ENST00000624062 1286 ntBASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 CYP4F22-201ENST00000269703 2641 ntAPPRIS P1 TSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC14.58□□□□□ -0.08
CCDC116Q8IYX3 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms