Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 ANKRD33-202ENST00000340970 1507 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AL354989.2-201ENST00000435838 1540 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CHRDL1-205ENST00000482160 1537 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 RAB4B-201ENST00000357052 1133 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DBI-203ENST00000393103 599 ntAPPRIS P4 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 LSM5-207ENST00000410044 687 ntTSL 3 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 GPAA1P2-201ENST00000417923 928 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AC007969.1-201ENST00000433675 447 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AL591846.1-201ENST00000451736 433 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SCN1B-204ENST00000596348 1176 ntTSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AL606495.2-201ENST00000605867 535 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AL645728.2-202ENST00000641679 227 ntBASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 TCEAL1-203ENST00000372626 721 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 BTBD6P1-201ENST00000412176 1267 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ARL4AP4-201ENST00000434170 518 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 AC104306.2-201ENST00000451877 341 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 RPSAP36-202ENST00000494591 1261 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 AC046168.2-201ENST00000560590 875 ntTSL 3 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 AP006547.1-201ENST00000563435 692 ntBASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 ATG10-203ENST00000458350 1795 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC13.81□□□□□ -0.2
RNFT1Q5M7Z0 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC13.81□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50.1 ms