Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 PYY2-201ENST00000315776 282 ntBASIC9.21□□□□□ -0.94
HSPG2P98160 ANG-202ENST00000397990 742 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 GYPC-203ENST00000409836 932 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 AC006328.1-201ENST00000437571 379 ntBASIC9.21□□□□□ -0.94
HSPG2P98160 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC9.21□□□□□ -0.94
HSPG2P98160 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 NXPH3-202ENST00000513748 1530 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC9.21□□□□□ -0.94
HSPG2P98160 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC9.21□□□□□ -0.94
HSPG2P98160 AC010547.4-201ENST00000561754 1378 ntAPPRIS P1 TSL 5 BASIC9.21□□□□□ -0.94
HSPG2P98160 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 OXA1L-201ENST00000285848 1719 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 SNRPC-201ENST00000244520 842 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 CCL19-201ENST00000311925 687 ntAPPRIS P1 TSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 PRTFDC1-202ENST00000376376 741 ntTSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 LINC01022-201ENST00000415652 394 ntTSL 3 BASIC9.21□□□□□ -0.94
HSPG2P98160 ACTG1P19-201ENST00000418987 1116 ntBASIC9.21□□□□□ -0.94
HSPG2P98160 AHCYP3-201ENST00000420053 1279 ntBASIC9.21□□□□□ -0.94
HSPG2P98160 CISD2-202ENST00000503643 808 ntTSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC9.21□□□□□ -0.94
HSPG2P98160 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 ZNF772-207ENST00000601768 482 ntTSL 3 BASIC9.21□□□□□ -0.94
HSPG2P98160 FCGR3A-208ENST00000638849 873 ntTSL 1 (best) BASIC9.21□□□□□ -0.94
HSPG2P98160 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC9.21□□□□□ -0.94
HSPG2P98160 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC9.21□□□□□ -0.94
HSPG2P98160 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 RBFOX3-203ENST00000580155 1519 ntAPPRIS P2 TSL 2 BASIC9.21□□□□□ -0.94
HSPG2P98160 AC006449.6-201ENST00000612330 2296 ntBASIC9.21□□□□□ -0.94
HSPG2P98160 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 AC106047.1-202ENST00000467484 482 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 KRT18P37-201ENST00000520711 1282 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 KCTD6-205ENST00000490264 1759 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 CD1E-206ENST00000368161 1689 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 RNVU1-8-201ENST00000364272 125 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 ACTG2-204ENST00000409918 927 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 SAPCD1-208ENST00000415669 916 ntAPPRIS P2 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 USB1-205ENST00000561743 1135 ntTSL 3 BASIC9.2□□□□□ -0.94
HSPG2P98160 INO80E-209ENST00000567254 625 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 TRMT112P3-201ENST00000580149 358 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 KLKP1-202ENST00000597246 1125 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC9.2□□□□□ -0.94
HSPG2P98160 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 DOK1-202ENST00000340004 1722 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 ATAT1-206ENST00000376485 1476 ntAPPRIS ALT1 TSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 LAIR1-209ENST00000434277 1645 ntAPPRIS ALT2 TSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 TNK2-201ENST00000333602 5270 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 MAPK13-202ENST00000373759 1036 ntTSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 PES1-204ENST00000402284 2144 ntTSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 NAA60-205ENST00000424546 1149 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 AC013448.2-201ENST00000440341 787 ntTSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 RN7SL173P-201ENST00000461853 292 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 F11R-204ENST00000537746 1245 ntTSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 AC138701.2-201ENST00000553634 226 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 MESP2-203ENST00000560219 859 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 MT1G-203ENST00000568675 628 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC9.2□□□□□ -0.94
HSPG2P98160 STX1A-201ENST00000222812 2095 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 STX1A-204ENST00000395156 2050 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC9.2□□□□□ -0.94
HSPG2P98160 NCF4-201ENST00000248899 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.2□□□□□ -0.94
HSPG2P98160 AC021305.1-201ENST00000520656 1514 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 AL645608.8-201ENST00000606034 2086 ntBASIC9.2□□□□□ -0.94
HSPG2P98160 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC9.19□□□□□ -0.94
HSPG2P98160 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC9.19□□□□□ -0.94
HSPG2P98160 AL929302.1-201ENST00000426556 871 ntBASIC9.19□□□□□ -0.94
HSPG2P98160 MAGEA7P-201ENST00000436482 942 ntBASIC9.19□□□□□ -0.94
HSPG2P98160 OR2R1P-201ENST00000441404 914 ntBASIC9.19□□□□□ -0.94
HSPG2P98160 CDC23-208ENST00000505120 455 ntTSL 3 BASIC9.19□□□□□ -0.94
HSPG2P98160 IFITM1-204ENST00000528780 730 ntAPPRIS P1 TSL 3 BASIC9.19□□□□□ -0.94
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms