Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC140878.1-201ENST00000565277 250 ntBASIC16.33■□□□□ 0.2
LIG3P49916 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.33■□□□□ 0.2
LIG3P49916 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 RDX-218ENST00000544551 4117 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.33■□□□□ 0.2
LIG3P49916 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 FLI1-201ENST00000281428 4151 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.33■□□□□ 0.2
LIG3P49916 AC087481.3-201ENST00000602886 1894 ntBASIC16.33■□□□□ 0.2
LIG3P49916 RBM6-201ENST00000266022 3750 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
LIG3P49916 OS9-204ENST00000389146 2091 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 UBA1-202ENST00000377269 2497 ntTSL 2 BASIC16.33■□□□□ 0.2
LIG3P49916 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 SLC19A2-201ENST00000236137 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LIG3P49916 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 PARVB-204ENST00000406477 1569 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 ISPD-202ENST00000407010 5524 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LIG3P49916 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.32■□□□□ 0.2
LIG3P49916 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.32■□□□□ 0.2
LIG3P49916 CICP8-201ENST00000455800 2813 ntBASIC16.32■□□□□ 0.2
LIG3P49916 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.32■□□□□ 0.2
LIG3P49916 ZNF789-211ENST00000493485 556 ntTSL 4 BASIC16.32■□□□□ 0.2
LIG3P49916 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIG3P49916 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LIG3P49916 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 AC005498.2-205ENST00000593218 784 ntBASIC16.32■□□□□ 0.2
LIG3P49916 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 AC007967.4-201ENST00000614700 386 ntBASIC16.32■□□□□ 0.2
LIG3P49916 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LIG3P49916 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
LIG3P49916 MYH6-202ENST00000405093 5941 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.32■□□□□ 0.2
LIG3P49916 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 CICP17-201ENST00000418553 2377 ntBASIC16.31■□□□□ 0.2
LIG3P49916 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 CUX1-215ENST00000556210 4044 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 AC068831.3-201ENST00000553321 1858 ntTSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.31■□□□□ 0.2
LIG3P49916 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 CUL1-201ENST00000325222 3064 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 AC025674.2-201ENST00000522622 2971 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 YTHDF2-201ENST00000373812 2925 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 FO538757.1-201ENST00000623083 1397 ntBASIC16.31■□□□□ 0.2
LIG3P49916 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.31■□□□□ 0.2
LIG3P49916 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 TREML5P-201ENST00000421694 576 ntBASIC16.31■□□□□ 0.2
LIG3P49916 AL353705.2-201ENST00000428243 662 ntBASIC16.31■□□□□ 0.2
LIG3P49916 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.31■□□□□ 0.2
LIG3P49916 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC16.31■□□□□ 0.2
LIG3P49916 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.31■□□□□ 0.2
LIG3P49916 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC16.31■□□□□ 0.2
LIG3P49916 AL390955.2-201ENST00000603032 514 ntBASIC16.31■□□□□ 0.2
LIG3P49916 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 OFD1-204ENST00000398395 3307 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LIG3P49916 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 ABCG1-205ENST00000398449 2998 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LIG3P49916 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms