Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CXCL12P48061 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 SLC51A-201ENST00000296327 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.15■□□□□ 0.02
CXCL12P48061 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.15■□□□□ 0.02
CXCL12P48061 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 AL021707.5-201ENST00000420118 461 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC15.15■□□□□ 0.02
CXCL12P48061 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC15.15■□□□□ 0.02
CXCL12P48061 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 RCC2P8-201ENST00000502779 1035 ntBASIC15.15■□□□□ 0.02
CXCL12P48061 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 POU5F1P2-201ENST00000521750 823 ntBASIC15.15■□□□□ 0.02
CXCL12P48061 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 NEU3-205ENST00000531619 582 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 UBXN1-214ENST00000533000 367 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 NPM1P43-201ENST00000558669 786 ntBASIC15.15■□□□□ 0.02
CXCL12P48061 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC15.15■□□□□ 0.02
CXCL12P48061 WDR7-208ENST00000589935 544 ntTSL 4 BASIC15.15■□□□□ 0.02
CXCL12P48061 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC15.15■□□□□ 0.02
CXCL12P48061 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CXCL12P48061 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CXCL12P48061 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 PLA1A-205ENST00000494440 1775 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 AC026904.3-201ENST00000636550 1530 ntTSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC15.14■□□□□ 0.01
CXCL12P48061 REXO1L5P-201ENST00000622260 2098 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 AC011450.1-202ENST00000358234 573 ntTSL 4 BASIC15.14■□□□□ 0.01
CXCL12P48061 RN7SKP175-201ENST00000408472 289 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 HLA-K-203ENST00000430151 1046 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.14■□□□□ 0.01
CXCL12P48061 RN7SL8P-201ENST00000461771 266 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 AC026434.2-201ENST00000506094 1078 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC15.14■□□□□ 0.01
CXCL12P48061 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC15.14■□□□□ 0.01
CXCL12P48061 C14orf178-204ENST00000557011 474 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 AC009065.3-201ENST00000562027 627 ntTSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 NRN1L-202ENST00000576147 681 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 TOMM7-207ENST00000621567 241 ntAPPRIS ALT1 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.14■□□□□ 0.01
CXCL12P48061 AL805961.1-201ENST00000642026 753 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 TBC1D3J-201ENST00000620719 1426 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 AGGF1P2-201ENST00000426656 2106 ntBASIC15.14■□□□□ 0.01
CXCL12P48061 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CXCL12P48061 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
CXCL12P48061 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
CXCL12P48061 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms