Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL18A1P39060 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC19.74■□□□□ 0.75
COL18A1P39060 LAMA4-208ENST00000431543 1080 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL18A1P39060 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC19.74■□□□□ 0.75
COL18A1P39060 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC19.74■□□□□ 0.75
COL18A1P39060 LINC00431-201ENST00000440735 1189 ntTSL 5 BASIC19.74■□□□□ 0.75
COL18A1P39060 AC008723.1-201ENST00000506922 207 ntBASIC19.74■□□□□ 0.75
COL18A1P39060 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC19.74■□□□□ 0.75
COL18A1P39060 KRTAP10-4-203ENST00000622352 1244 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
COL18A1P39060 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 AC087481.3-201ENST00000602886 1894 ntBASIC19.74■□□□□ 0.75
COL18A1P39060 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
COL18A1P39060 CCDC51-201ENST00000395694 1560 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.73■□□□□ 0.75
COL18A1P39060 LINC00665-203ENST00000438368 1863 ntTSL 5 BASIC19.73■□□□□ 0.75
COL18A1P39060 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 C11orf52-201ENST00000278601 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 CMTM5-202ENST00000342473 725 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 CMTM5-205ENST00000397227 818 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 HDDC2-202ENST00000398153 918 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 AC097065.1-201ENST00000425737 517 ntBASIC19.73■□□□□ 0.75
COL18A1P39060 CMTM5-208ENST00000555731 831 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC19.73■□□□□ 0.75
COL18A1P39060 AC027601.3-201ENST00000622907 509 ntBASIC19.73■□□□□ 0.75
COL18A1P39060 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.73■□□□□ 0.75
COL18A1P39060 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 AP005117.1-202ENST00000581724 1908 ntBASIC19.73■□□□□ 0.75
COL18A1P39060 ZNF764-201ENST00000252797 2738 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 BX005266.2-201ENST00000450704 1549 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
COL18A1P39060 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
COL18A1P39060 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 IGHV3-48-201ENST00000390624 432 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
COL18A1P39060 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 AC026320.2-201ENST00000434379 478 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 PIN4P1-201ENST00000451079 396 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 RN7SL81P-201ENST00000493781 261 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 TMEM231-206ENST00000565067 1078 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 AC073911.3-201ENST00000624401 631 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 ABCB8-212ENST00000477719 1625 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 RHOH-218ENST00000613272 1865 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
COL18A1P39060 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 MBP-201ENST00000354542 575 ntTSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 CRIP3-202ENST00000372569 962 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 PTPA-215ENST00000432124 567 ntTSL 4 BASIC19.72■□□□□ 0.75
COL18A1P39060 AL627422.1-201ENST00000434104 580 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 MPZL3-203ENST00000525386 973 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC19.72■□□□□ 0.75
COL18A1P39060 ALKBH2-208ENST00000619381 895 ntTSL 5 BASIC19.72■□□□□ 0.75
COL18A1P39060 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.72■□□□□ 0.75
COL18A1P39060 AC112693.3-201ENST00000624819 1983 ntBASIC19.72■□□□□ 0.75
COL18A1P39060 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
COL18A1P39060 LINC00513-201ENST00000447430 1616 ntTSL 5 BASIC19.71■□□□□ 0.75
COL18A1P39060 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.71■□□□□ 0.75
COL18A1P39060 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 TMPRSS3-202ENST00000398397 1342 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 MSTO1-202ENST00000368341 2245 ntTSL 2 BASIC19.71■□□□□ 0.75
COL18A1P39060 HDHD3-201ENST00000238379 1834 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 AC007292.2-201ENST00000593524 1812 ntBASIC19.71■□□□□ 0.75
COL18A1P39060 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC19.71■□□□□ 0.75
COL18A1P39060 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 AL357563.1-201ENST00000404728 395 ntBASIC19.71■□□□□ 0.75
COL18A1P39060 NCK1-AS1-203ENST00000474250 827 ntTSL 2 BASIC19.71■□□□□ 0.75
COL18A1P39060 AC026410.1-201ENST00000507366 1101 ntBASIC19.71■□□□□ 0.75
COL18A1P39060 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 MIR6858-201ENST00000620733 67 ntBASIC19.71■□□□□ 0.75
COL18A1P39060 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
COL18A1P39060 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 AC005726.3-202ENST00000577814 1316 ntTSL 3 BASIC19.71■□□□□ 0.75
COL18A1P39060 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
COL18A1P39060 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC19.71■□□□□ 0.74
COL18A1P39060 RMND1-202ENST00000367303 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 NCR3-204ENST00000376073 1097 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
COL18A1P39060 AC103810.10-201ENST00000606504 343 ntBASIC19.7■□□□□ 0.74
COL18A1P39060 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC19.7■□□□□ 0.74
COL18A1P39060 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
COL18A1P39060 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms