Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX2P35548 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC14.79□□□□□ -0.04
MSX2P35548 CYP1A1-207ENST00000567032 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.79□□□□□ -0.04
MSX2P35548 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC14.79□□□□□ -0.04
MSX2P35548 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
MSX2P35548 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.79□□□□□ -0.04
MSX2P35548 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 ADAM15-209ENST00000449910 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
MSX2P35548 COL6A4P2-202ENST00000504443 2753 ntBASIC14.79□□□□□ -0.04
MSX2P35548 OR2V1-202ENST00000641318 2665 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
MSX2P35548 RFX2-222ENST00000592546 2578 ntAPPRIS ALT1 TSL 2 BASIC14.79□□□□□ -0.04
MSX2P35548 GGT5-202ENST00000327365 2494 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 SRC-202ENST00000373558 4304 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 SCARA5-201ENST00000354914 4026 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
MSX2P35548 ADAM33-201ENST00000350009 3480 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 ARHGAP10-201ENST00000336498 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 DUSP18-204ENST00000403268 2920 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX2P35548 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 POU6F1-208ENST00000550824 2664 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 RPS2P28-201ENST00000314255 741 ntBASIC14.78□□□□□ -0.04
MSX2P35548 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
MSX2P35548 KRT18P67-201ENST00000432816 1264 ntBASIC14.78□□□□□ -0.04
MSX2P35548 AC098831.1-202ENST00000438821 336 ntBASIC14.78□□□□□ -0.04
MSX2P35548 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.78□□□□□ -0.04
MSX2P35548 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.78□□□□□ -0.04
MSX2P35548 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC14.78□□□□□ -0.04
MSX2P35548 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.78□□□□□ -0.04
MSX2P35548 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 AC007064.4-201ENST00000637740 555 ntBASIC14.78□□□□□ -0.04
MSX2P35548 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 BAIAP3-202ENST00000397488 4583 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 AC005252.3-201ENST00000623855 2258 ntBASIC14.78□□□□□ -0.04
MSX2P35548 TRPV4-202ENST00000418703 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 CDC25B-205ENST00000439880 3096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 MAGED2-201ENST00000218439 1958 ntAPPRIS P2 TSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 BEND3P1-201ENST00000421591 1944 ntBASIC14.78□□□□□ -0.04
MSX2P35548 AXL-201ENST00000301178 4737 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
MSX2P35548 KIF7-201ENST00000394412 4551 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
MSX2P35548 PCDHGA3-203ENST00000619750 2695 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
MSX2P35548 CASC2-202ENST00000426021 3232 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 POLM-203ENST00000395831 2380 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 SF1-209ENST00000433274 2317 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX2P35548 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX2P35548 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX2P35548 SEMA4B-201ENST00000332496 3781 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC14.77□□□□□ -0.04
MSX2P35548 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
MSX2P35548 MCHR1-201ENST00000249016 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 CICP8-201ENST00000455800 2813 ntBASIC14.77□□□□□ -0.04
MSX2P35548 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC14.77□□□□□ -0.04
MSX2P35548 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.77□□□□□ -0.04
MSX2P35548 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
MSX2P35548 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.77□□□□□ -0.05
MSX2P35548 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC14.77□□□□□ -0.05
MSX2P35548 RNA5SP410-201ENST00000516285 106 ntBASIC14.77□□□□□ -0.05
MSX2P35548 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC14.77□□□□□ -0.05
MSX2P35548 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC14.77□□□□□ -0.05
MSX2P35548 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC14.77□□□□□ -0.05
MSX2P35548 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 AC073389.1-201ENST00000595595 795 ntBASIC14.77□□□□□ -0.05
MSX2P35548 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
MSX2P35548 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms