Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SNRPF-204ENST00000552085 815 ntTSL 3 BASIC17.68■□□□□ 0.42
SCN4AP35499 MT3-203ENST00000565838 421 ntTSL 3 BASIC17.68■□□□□ 0.42
SCN4AP35499 MIR2392-201ENST00000584881 84 ntBASIC17.68■□□□□ 0.42
SCN4AP35499 AC027601.3-201ENST00000622907 509 ntBASIC17.68■□□□□ 0.42
SCN4AP35499 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 KLK3-216ENST00000617027 1341 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 IFT74-203ENST00000433700 2119 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
SCN4AP35499 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 AL135901.1-201ENST00000451812 333 ntBASIC17.68■□□□□ 0.42
SCN4AP35499 PGAM1P12-201ENST00000505622 748 ntBASIC17.68■□□□□ 0.42
SCN4AP35499 SPINT2-204ENST00000587090 1246 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
SCN4AP35499 TMEM205-210ENST00000588560 840 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
SCN4AP35499 AL451007.2-201ENST00000632004 563 ntBASIC17.68■□□□□ 0.42
SCN4AP35499 KRT33A-201ENST00000007735 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
SCN4AP35499 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 AHCYP4-201ENST00000419201 1315 ntBASIC17.67■□□□□ 0.42
SCN4AP35499 MRPL37P1-201ENST00000592451 1337 ntBASIC17.67■□□□□ 0.42
SCN4AP35499 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC17.67■□□□□ 0.42
SCN4AP35499 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC17.67■□□□□ 0.42
SCN4AP35499 C20orf96-202ENST00000382369 1420 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC17.67■□□□□ 0.42
SCN4AP35499 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
SCN4AP35499 PLAC9P1-201ENST00000397540 389 ntTSL 2 BASIC17.67■□□□□ 0.42
SCN4AP35499 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC17.67■□□□□ 0.42
SCN4AP35499 AC084030.1-201ENST00000455068 561 ntTSL 4 BASIC17.67■□□□□ 0.42
SCN4AP35499 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC17.67■□□□□ 0.42
SCN4AP35499 TUBB3-208ENST00000555576 572 ntTSL 4 BASIC17.67■□□□□ 0.42
SCN4AP35499 AC007952.4-201ENST00000573866 637 ntBASIC17.67■□□□□ 0.42
SCN4AP35499 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 PSTPIP1-207ENST00000559295 1349 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
SCN4AP35499 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 MOGAT2-201ENST00000198801 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 PSME2-201ENST00000216802 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
SCN4AP35499 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.67■□□□□ 0.42
SCN4AP35499 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 SH2B3-202ENST00000538307 2062 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC17.66■□□□□ 0.42
SCN4AP35499 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 RAD51C-203ENST00000421782 567 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 AC093909.3-201ENST00000504783 336 ntBASIC17.66■□□□□ 0.42
SCN4AP35499 AC034231.1-201ENST00000507251 537 ntTSL 4 BASIC17.66■□□□□ 0.42
SCN4AP35499 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 FAM86B3P-203ENST00000523992 854 ntBASIC17.66■□□□□ 0.42
SCN4AP35499 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC17.66■□□□□ 0.42
SCN4AP35499 FXYD6-FXYD2-201ENST00000532984 670 ntTSL 3 BASIC17.66■□□□□ 0.42
SCN4AP35499 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC17.66■□□□□ 0.42
SCN4AP35499 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 LINC01569-203ENST00000573268 694 ntTSL 3 BASIC17.66■□□□□ 0.42
SCN4AP35499 AC136624.2-201ENST00000574883 542 ntTSL 3 BASIC17.66■□□□□ 0.42
SCN4AP35499 ANAPC11-221ENST00000584314 559 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 BX088702.1-201ENST00000610784 235 ntBASIC17.66■□□□□ 0.42
SCN4AP35499 GDPD5-214ENST00000533784 2441 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 LETMD1-235ENST00000552739 1713 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 ZNF619-201ENST00000314686 2233 ntTSL 2 BASIC17.66■□□□□ 0.42
SCN4AP35499 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.66■□□□□ 0.42
SCN4AP35499 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SCN4AP35499 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms