Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.15□□□□□ -0.14
MSX1P28360 ZNF707-203ENST00000442058 562 ntTSL 4 BASIC14.15□□□□□ -0.14
MSX1P28360 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX1P28360 C12orf10-204ENST00000548632 988 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.15□□□□□ -0.14
MSX1P28360 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC14.15□□□□□ -0.14
MSX1P28360 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
MSX1P28360 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.15□□□□□ -0.14
MSX1P28360 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
MSX1P28360 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.14□□□□□ -0.15
MSX1P28360 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
MSX1P28360 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 NSL1-201ENST00000366976 722 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 HIST1H2BPS3-201ENST00000419683 341 ntBASIC14.14□□□□□ -0.15
MSX1P28360 TMEM14DP-201ENST00000422205 345 ntBASIC14.14□□□□□ -0.15
MSX1P28360 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 C9orf41-AS1-201ENST00000455609 719 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC14.14□□□□□ -0.15
MSX1P28360 TMEM261P1-201ENST00000604899 340 ntBASIC14.14□□□□□ -0.15
MSX1P28360 IFNL3-202ENST00000613087 734 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 PHTF1-201ENST00000357783 2747 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.14□□□□□ -0.15
MSX1P28360 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 CYP4F22-202ENST00000601005 2445 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 AC126365.1-201ENST00000578585 1514 ntBASIC14.14□□□□□ -0.15
MSX1P28360 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 KHNYN-201ENST00000251343 6725 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 SEZ6L-209ENST00000529632 6534 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
MSX1P28360 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
MSX1P28360 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
MSX1P28360 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 AC009090.5-201ENST00000624886 2285 ntBASIC14.13□□□□□ -0.15
MSX1P28360 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.13□□□□□ -0.15
MSX1P28360 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
MSX1P28360 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
MSX1P28360 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.13□□□□□ -0.15
MSX1P28360 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms