Protein–RNA interactions for Protein: O75533

SF3B1, Splicing factor 3B subunit 1, humanhuman

Known RBP eCLIP

Length 1,304 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1O75533 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC19.27■□□□□ 0.684e-6■■■■■ 93.6
SF3B1O75533 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC19.17■□□□□ 0.664e-6■■■■■ 93.6
SF3B1O75533 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.664e-6■■■■■ 93.6
SF3B1O75533 DRG2-219ENST00000583162 1066 ntTSL 219.11■□□□□ 0.653e-9■■■■■ 93.6
SF3B1O75533 NABP2-204ENST00000399713 663 ntTSL 519.01■□□□□ 0.633e-9■■■■■ 93.6
SF3B1O75533 HEXB-207ENST00000511181 2021 ntTSL 1 (best) BASIC18.97■□□□□ 0.633e-9■■■■■ 93.6
SF3B1O75533 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.623e-9■■■■■ 93.6
SF3B1O75533 POLRMT-206ENST00000590709 1106 ntTSL 218.22■□□□□ 0.513e-9■■■■■ 93.6
SF3B1O75533 DNAJC17-205ENST00000559310 792 ntTSL 1 (best)18.07■□□□□ 0.483e-9■■■■■ 93.6
SF3B1O75533 NDUFAF6-218ENST00000523378 949 ntTSL 318.05■□□□□ 0.486e-6■■■■■ 93.6
SF3B1O75533 DRG2-206ENST00000496428 795 ntTSL 317.98■□□□□ 0.473e-9■■■■■ 93.6
SF3B1O75533 EME2-206ENST00000570069 5613 ntTSL 217.82■□□□□ 0.444e-6■■■■■ 93.6
SF3B1O75533 DTYMK-202ENST00000400770 1089 ntTSL 1 (best)17.65■□□□□ 0.423e-9■■■■■ 93.6
SF3B1O75533 DNAJC17-207ENST00000560301 987 ntTSL 1 (best)17.6■□□□□ 0.413e-9■■■■■ 93.6
SF3B1O75533 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.43e-9■■■■■ 93.6
SF3B1O75533 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.51■□□□□ 0.393e-9■■■■■ 93.6
SF3B1O75533 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.382e-6■■■■■ 93.6
SF3B1O75533 OS9-222ENST00000552787 962 ntTSL 217.39■□□□□ 0.373e-9■■■■■ 93.6
SF3B1O75533 DRG2-216ENST00000582314 1530 ntTSL 517.39■□□□□ 0.373e-9■■■■■ 93.6
SF3B1O75533 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.366e-6■■■■■ 93.6
SF3B1O75533 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC16.88■□□□□ 0.294e-6■■■■■ 93.6
SF3B1O75533 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.83■□□□□ 0.286e-6■■■■■ 93.6
SF3B1O75533 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.273e-9■■■■■ 93.6
SF3B1O75533 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.72■□□□□ 0.273e-9■■■■■ 93.6
SF3B1O75533 AMPD2-209ENST00000474459 814 ntTSL 416.7■□□□□ 0.264e-6■■■■■ 93.6
SF3B1O75533 WWP2-215ENST00000568845 410 ntTSL 316.55■□□□□ 0.243e-9■■■■■ 93.6
SF3B1O75533 MAN2C1-210ENST00000563058 592 ntTSL 416.52■□□□□ 0.243e-9■■■■■ 93.6
SF3B1O75533 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC16.34■□□□□ 0.216e-6■■■■■ 93.6
SF3B1O75533 NDUFAF6-208ENST00000519136 816 ntTSL 516.33■□□□□ 0.26e-6■■■■■ 93.6
SF3B1O75533 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.184e-6■■■■■ 93.6
SF3B1O75533 OS9-215ENST00000550699 553 ntTSL 316■□□□□ 0.153e-9■■■■■ 93.6
SF3B1O75533 MAN2C1-238ENST00000568944 591 ntTSL 415.91■□□□□ 0.143e-9■■■■■ 93.6
SF3B1O75533 ACAA1-215ENST00000469600 876 ntTSL 215.83■□□□□ 0.123e-9■■■■■ 93.6
SF3B1O75533 DTYMK-205ENST00000445261 518 ntTSL 515.8■□□□□ 0.123e-9■■■■■ 93.6
SF3B1O75533 ECSIT-201ENST00000252440 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.124e-6■■■■■ 93.6
SF3B1O75533 TBC1D10A-205ENST00000433426 2021 ntTSL 515.66■□□□□ 0.16e-6■■■■■ 93.6
SF3B1O75533 DRG2-203ENST00000467099 2531 ntTSL 215.66■□□□□ 0.13e-9■■■■■ 93.6
SF3B1O75533 DRG2-220ENST00000583355 891 ntTSL 3 BASIC15.58■□□□□ 0.083e-9■■■■■ 93.6
SF3B1O75533 DRG2-214ENST00000580055 1838 ntTSL 515.35■□□□□ 0.053e-9■■■■■ 93.6
SF3B1O75533 OS9-204ENST00000389146 2091 ntTSL 2 BASIC15.26■□□□□ 0.033e-9■■■■■ 93.6
SF3B1O75533 RRM2-206ENST00000474701 1060 ntTSL 215.22■□□□□ 0.036e-6■■■■■ 93.6
SF3B1O75533 DNAJC17-212ENST00000627802 428 ntTSL 4 BASIC15.2■□□□□ 0.023e-9■■■■■ 93.6
SF3B1O75533 SOCS2-AS1-204ENST00000551626 618 ntTSL 4 BASIC15.06■□□□□ 03e-9■■■■■ 93.6
SF3B1O75533 AMPD2-215ENST00000526301 2354 ntTSL 1 (best)14.87□□□□□ -0.034e-6■■■■■ 93.6
SF3B1O75533 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC14.7□□□□□ -0.063e-9■■■■■ 93.6
SF3B1O75533 DNAJC17-208ENST00000560645 903 ntTSL 1 (best)14.66□□□□□ -0.063e-9■■■■■ 93.6
SF3B1O75533 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.083e-9■■■■■ 93.6
SF3B1O75533 PRR12-203ENST00000615927 4479 ntAPPRIS ALT2 TSL 5 BASIC14.52□□□□□ -0.094e-6■■■■■ 93.6
SF3B1O75533 APOBEC3D-202ENST00000427494 1961 ntTSL 1 (best) BASIC14.46□□□□□ -0.093e-9■■■■■ 93.6
SF3B1O75533 RAB5B-203ENST00000546810 589 ntTSL 214.41□□□□□ -0.13e-9■■■■■ 93.6
SF3B1O75533 EME2-202ENST00000561903 4586 ntTSL 214.38□□□□□ -0.114e-6■■■■■ 93.6
SF3B1O75533 AMPD2-219ENST00000528667 3134 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.114e-6■■■■■ 93.6
SF3B1O75533 FLII-207ENST00000478416 878 ntTSL 214.34□□□□□ -0.113e-9■■■■■ 93.6
SF3B1O75533 ECSIT-211ENST00000592312 1286 ntTSL 5 BASIC14.25□□□□□ -0.134e-6■■■■■ 93.6
SF3B1O75533 DRG2-202ENST00000395726 1897 ntTSL 5 BASIC14.15□□□□□ -0.143e-9■■■■■ 93.6
SF3B1O75533 SLC38A1-204ENST00000546893 2332 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.154e-6■■■■■ 93.6
SF3B1O75533 ACAA1-211ENST00000452171 927 ntTSL 313.37□□□□□ -0.273e-9■■■■■ 93.6
SF3B1O75533 MAN2C1-231ENST00000566253 549 ntTSL 413.35□□□□□ -0.273e-9■■■■■ 93.6
SF3B1O75533 WWP2-219ENST00000569658 583 ntTSL 213.3□□□□□ -0.283e-9■■■■■ 93.6
SF3B1O75533 DNAJC17-209ENST00000561018 880 ntTSL 1 (best)13.29□□□□□ -0.283e-9■■■■■ 93.6
SF3B1O75533 DNAJC17-206ENST00000560065 704 ntTSL 513.25□□□□□ -0.293e-9■■■■■ 93.6
SF3B1O75533 DRG2-212ENST00000579224 683 ntTSL 513.14□□□□□ -0.313e-9■■■■■ 93.6
SF3B1O75533 SLC25A53-201ENST00000467290 731 ntTSL 213.07□□□□□ -0.323e-9■■■■■ 93.6
SF3B1O75533 RAB5B-204ENST00000548068 596 ntTSL 413.05□□□□□ -0.323e-9■■■■■ 93.6
SF3B1O75533 RPS10P7-201ENST00000441932 2329 ntTSL 2 BASIC13.01□□□□□ -0.333e-9■■■■■ 93.6
SF3B1O75533 SNRPE-203ENST00000469451 248 ntTSL 312.85□□□□□ -0.353e-9■■■■■ 93.6
SF3B1O75533 DRG2-218ENST00000582528 5342 ntTSL 212.79□□□□□ -0.363e-9■■■■■ 93.6
SF3B1O75533 AC008158.1-201ENST00000578759 3668 ntBASIC12.75□□□□□ -0.373e-9■■■■■ 93.6
SF3B1O75533 SLC38A1-202ENST00000439706 3436 ntAPPRIS P1 TSL 1 (best) BASIC12.75□□□□□ -0.374e-6■■■■■ 93.6
SF3B1O75533 FLII-205ENST00000473425 585 ntTSL 412.74□□□□□ -0.373e-9■■■■■ 93.6
SF3B1O75533 AMPD2-203ENST00000358729 2838 ntTSL 2 BASIC12.73□□□□□ -0.374e-6■■■■■ 93.6
SF3B1O75533 FLII-229ENST00000584444 782 ntTSL 312.64□□□□□ -0.393e-9■■■■■ 93.6
SF3B1O75533 SLC38A1-206ENST00000549049 3196 ntAPPRIS P1 TSL 1 (best) BASIC12.62□□□□□ -0.394e-6■■■■■ 93.6
SF3B1O75533 DRG2-208ENST00000577450 566 ntTSL 412.57□□□□□ -0.43e-9■■■■■ 93.6
SF3B1O75533 DRG2-213ENST00000579601 550 ntTSL 412.57□□□□□ -0.43e-9■■■■■ 93.6
SF3B1O75533 NDUFAF6-202ENST00000396113 2549 ntTSL 5 BASIC12.49□□□□□ -0.416e-6■■■■■ 93.6
SF3B1O75533 DRG2-215ENST00000580929 389 ntTSL 512.49□□□□□ -0.413e-9■■■■■ 93.6
SF3B1O75533 KIF23-213ENST00000561089 2743 ntTSL 1 (best)12.39□□□□□ -0.438e-7■■■■■ 93.6
SF3B1O75533 OS9-209ENST00000547079 583 ntTSL 312.33□□□□□ -0.443e-9■■■■■ 93.6
SF3B1O75533 ACAA1-214ENST00000469559 4720 ntTSL 212.27□□□□□ -0.443e-9■■■■■ 93.6
SF3B1O75533 DTYMK-203ENST00000420144 575 ntTSL 512.23□□□□□ -0.453e-9■■■■■ 93.6
SF3B1O75533 RHBDD1-201ENST00000341329 4883 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.484e-6■■■■■ 93.6
SF3B1O75533 FLII-225ENST00000581349 582 ntTSL 212.01□□□□□ -0.493e-9■■■■■ 93.6
SF3B1O75533 ZNF252P-205ENST00000528392 599 ntTSL 4 BASIC11.89□□□□□ -0.513e-9■■■■■ 93.6
SF3B1O75533 AMPD2-201ENST00000256578 3899 ntAPPRIS P2 TSL 5 BASIC11.75□□□□□ -0.534e-6■■■■■ 93.6
SF3B1O75533 SLC38A1-201ENST00000398637 8066 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.544e-6■■■■■ 93.6
SF3B1O75533 SLC38A1-210ENST00000552197 2599 ntTSL 1 (best) BASIC11.58□□□□□ -0.564e-6■■■■■ 93.6
SF3B1O75533 AMPD2-202ENST00000342115 3728 ntTSL 1 (best) BASIC11.57□□□□□ -0.564e-6■■■■■ 93.6
SF3B1O75533 RRM2-212ENST00000615152 3434 ntTSL 1 (best) BASIC11.19□□□□□ -0.626e-6■■■■■ 93.6
SF3B1O75533 WWP2-204ENST00000561780 574 ntTSL 411.17□□□□□ -0.623e-9■■■■■ 93.6
SF3B1O75533 ZNF252P-207ENST00000534037 1112 ntTSL 1 (best)11.1□□□□□ -0.633e-9■■■■■ 93.6
SF3B1O75533 FLII-220ENST00000578101 4148 ntTSL 211.03□□□□□ -0.643e-9■■■■■ 93.6
SF3B1O75533 ECSIT-204ENST00000585318 993 ntTSL 510.97□□□□□ -0.654e-6■■■■■ 93.6
SF3B1O75533 RFX3-210ENST00000457373 822 ntTSL 510.93□□□□□ -0.663e-9■■■■■ 93.6
SF3B1O75533 APOBEC3D-201ENST00000216099 2528 ntAPPRIS P1 TSL 2 BASIC10.91□□□□□ -0.663e-9■■■■■ 93.6
SF3B1O75533 AMPD2-204ENST00000369840 3130 ntAPPRIS ALT2 TSL 510.88□□□□□ -0.674e-6■■■■■ 93.6
SF3B1O75533 FLII-222ENST00000579294 3936 ntTSL 1 (best) BASIC10.84□□□□□ -0.673e-9■■■■■ 93.6
SF3B1O75533 KIF23-207ENST00000559279 3411 ntAPPRIS ALT2 TSL 1 (best) BASIC10.84□□□□□ -0.678e-7■■■■■ 93.6
SF3B1O75533 SLC25A53-202ENST00000594199 6225 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.683e-9■■■■■ 93.6
SF3B1O75533 NABP2-205ENST00000447747 770 ntTSL 510.49□□□□□ -0.733e-9■■■■■ 93.6
Retrieved 100 of 46,956 protein–RNA pairs in 1631.6 ms