Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC21.78■■□□□ 1.08
MSH5O43196 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH5O43196 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 PROK2-202ENST00000353065 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH5O43196 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
MSH5O43196 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC21.77■■□□□ 1.08
MSH5O43196 FABP12P1-201ENST00000401911 322 ntBASIC21.77■■□□□ 1.08
MSH5O43196 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH5O43196 AC010973.1-201ENST00000479085 511 ntTSL 4 BASIC21.77■■□□□ 1.08
MSH5O43196 AC096571.1-202ENST00000506634 735 ntBASIC21.77■■□□□ 1.08
MSH5O43196 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 AC090531.1-201ENST00000547168 923 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH5O43196 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.77■■□□□ 1.08
MSH5O43196 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC21.77■■□□□ 1.08
MSH5O43196 AP005482.3-201ENST00000585877 720 ntBASIC21.77■■□□□ 1.08
MSH5O43196 DEFB131E-202ENST00000602581 683 ntBASIC21.77■■□□□ 1.08
MSH5O43196 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 OR51C1P-202ENST00000641159 1444 ntBASIC21.77■■□□□ 1.08
MSH5O43196 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 LILRB5-202ENST00000345866 1864 ntTSL 2 BASIC21.77■■□□□ 1.08
MSH5O43196 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.77■■□□□ 1.08
MSH5O43196 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
MSH5O43196 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
MSH5O43196 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC21.77■■□□□ 1.07
MSH5O43196 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC21.77■■□□□ 1.07
MSH5O43196 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
MSH5O43196 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC21.77■■□□□ 1.07
MSH5O43196 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 CLEC4A-201ENST00000229332 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 AC023590.1-202ENST00000366457 781 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 RPL23AP7-201ENST00000391616 738 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 AC000120.1-201ENST00000414227 1589 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 DUTP8-201ENST00000418412 489 ntBASIC21.76■■□□□ 1.07
MSH5O43196 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 AC092580.3-201ENST00000430932 139 ntBASIC21.76■■□□□ 1.07
MSH5O43196 AC241585.1-201ENST00000433527 519 ntBASIC21.76■■□□□ 1.07
MSH5O43196 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 THAP6-205ENST00000504190 1004 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 AC092535.2-201ENST00000513176 1204 ntBASIC21.76■■□□□ 1.07
MSH5O43196 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 LINC02369-202ENST00000540745 801 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC21.76■■□□□ 1.07
MSH5O43196 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 AL442163.2-201ENST00000553912 710 ntBASIC21.76■■□□□ 1.07
MSH5O43196 AC007614.3-201ENST00000564875 654 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC21.76■■□□□ 1.07
MSH5O43196 AC024563.1-202ENST00000597533 419 ntTSL 3 BASIC21.76■■□□□ 1.07
MSH5O43196 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 SNX6P1-201ENST00000601728 1224 ntBASIC21.76■■□□□ 1.07
MSH5O43196 AC034236.3-201ENST00000605999 461 ntBASIC21.76■■□□□ 1.07
MSH5O43196 ARHGAP44-202ENST00000340825 4211 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 ARHGAP44-203ENST00000379672 4228 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 OR4K1-202ENST00000641172 1339 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
MSH5O43196 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
MSH5O43196 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
MSH5O43196 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 SNX18-202ENST00000343017 3140 ntBASIC21.75■■□□□ 1.07
MSH5O43196 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC21.75■■□□□ 1.07
MSH5O43196 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH5O43196 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH5O43196 RHBDF1P1-201ENST00000427504 1941 ntBASIC21.75■■□□□ 1.07
MSH5O43196 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC21.75■■□□□ 1.07
MSH5O43196 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 GPM6A-210ENST00000506894 2614 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC21.75■■□□□ 1.07
MSH5O43196 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
MSH5O43196 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms