Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC13.21□□□□□ -0.29
SDCBPO00560 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC13.21□□□□□ -0.29
SDCBPO00560 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC13.21□□□□□ -0.29
SDCBPO00560 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC13.21□□□□□ -0.29
SDCBPO00560 AC010327.4-202ENST00000591484 748 ntBASIC13.21□□□□□ -0.29
SDCBPO00560 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC13.21□□□□□ -0.29
SDCBPO00560 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC13.21□□□□□ -0.29
SDCBPO00560 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.21□□□□□ -0.29
SDCBPO00560 CICP14-201ENST00000629111 2732 ntBASIC13.21□□□□□ -0.29
SDCBPO00560 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 USP35-204ENST00000530267 2419 ntTSL 2 BASIC13.21□□□□□ -0.3
SDCBPO00560 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC13.21□□□□□ -0.3
SDCBPO00560 UBE2I-201ENST00000325437 2832 ntAPPRIS P1 TSL 3 BASIC13.21□□□□□ -0.3
SDCBPO00560 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC13.21□□□□□ -0.3
SDCBPO00560 AC140479.7-201ENST00000636301 2332 ntBASIC13.21□□□□□ -0.3
SDCBPO00560 FKBP9-201ENST00000242209 3462 ntAPPRIS P1 TSL 1 (best) BASIC13.21□□□□□ -0.3
SDCBPO00560 TBC1D3G-201ENST00000569055 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 TBC1D3H-201ENST00000610350 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 TBC1D3L-202ENST00000617678 2065 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 STAT1-203ENST00000392323 2723 ntAPPRIS ALT1 TSL 2 BASIC13.2□□□□□ -0.3
SDCBPO00560 KIF19-202ENST00000389916 3643 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 PAPOLA-201ENST00000216277 4519 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 LMBRD1-202ENST00000370577 2209 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC13.2□□□□□ -0.3
SDCBPO00560 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 NDC1-201ENST00000371429 5134 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 RPS8P6-201ENST00000426177 609 ntBASIC13.2□□□□□ -0.3
SDCBPO00560 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.2□□□□□ -0.3
SDCBPO00560 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC13.2□□□□□ -0.3
SDCBPO00560 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC13.2□□□□□ -0.3
SDCBPO00560 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 RARRES2P9-201ENST00000565168 469 ntBASIC13.2□□□□□ -0.3
SDCBPO00560 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC13.2□□□□□ -0.3
SDCBPO00560 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SDCBPO00560 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 MTRF1L-202ENST00000367231 3539 ntTSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.2□□□□□ -0.3
SDCBPO00560 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.2□□□□□ -0.3
SDCBPO00560 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC13.2□□□□□ -0.3
SDCBPO00560 PPP1R12A-AS1-201ENST00000552885 3234 ntTSL 3 BASIC13.2□□□□□ -0.3
SDCBPO00560 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC13.2□□□□□ -0.3
SDCBPO00560 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 SP6-201ENST00000342234 3800 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.19□□□□□ -0.3
SDCBPO00560 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 AC138028.2-202ENST00000567968 4528 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 GPRASP1-205ENST00000537097 5980 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 LINC00691-201ENST00000432505 2232 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ARRDC4-201ENST00000268042 4072 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC13.19□□□□□ -0.3
SDCBPO00560 SCAMP4-202ENST00000409472 2394 ntTSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 NKX2-6-201ENST00000325017 906 ntAPPRIS P1 TSL 2 BASIC13.19□□□□□ -0.3
SDCBPO00560 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
SDCBPO00560 COA5-202ENST00000409997 557 ntTSL 4 BASIC13.19□□□□□ -0.3
SDCBPO00560 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC13.19□□□□□ -0.3
SDCBPO00560 AL353705.2-201ENST00000428243 662 ntBASIC13.19□□□□□ -0.3
SDCBPO00560 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC13.19□□□□□ -0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms