Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 FGD5-206ENST00000543601 5768 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 DLGAP2-215ENST00000637795 3380 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 C9orf47-201ENST00000334490 4829 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RBM46-204ENST00000514866 2315 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CYP4F3-203ENST00000586182 2338 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AMT-224ENST00000635808 1610 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CENPM-205ENST00000404067 905 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RPL37AP1-201ENST00000412502 279 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AC055876.3-201ENST00000431496 288 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 HIST3H2BA-201ENST00000436555 524 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RN7SL618P-201ENST00000477850 296 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AC097493.3-201ENST00000509725 367 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AC027796.2-201ENST00000575326 344 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AC138649.4-201ENST00000612222 287 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TEX28P1-201ENST00000613479 1221 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TEX28P2-201ENST00000617764 1221 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AL390754.1-201ENST00000619088 582 ntBASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RER1-203ENST00000378513 3000 ntTSL 3 BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
FOXA2Q9Y261 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 CD19-201ENST00000324662 1932 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 GRN-214ENST00000589265 1632 ntTSL 5 BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
FOXA2Q9Y261 UGDH-201ENST00000316423 3216 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 HNRNPA3P1-201ENST00000401429 1139 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 GHSR-202ENST00000427970 912 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 BASP1P1-201ENST00000430708 665 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AC241585.1-201ENST00000433527 519 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 HNRNPA3P5-201ENST00000455201 833 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AL512638.1-201ENST00000457493 794 ntBASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
FOXA2Q9Y261 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms