Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.7
SHANK3Q9BYB0 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 AC112693.3-201ENST00000624819 1983 ntBASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 SPATA20-202ENST00000356488 2634 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 CNR1-201ENST00000362094 1252 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 RPS9P1-201ENST00000419943 583 ntBASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 VEGFB-202ENST00000426086 979 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 XBP1P1-201ENST00000436573 652 ntBASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 AC084781.1-201ENST00000613737 656 ntBASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 AC013726.1-201ENST00000563747 2285 ntBASIC19.39■□□□□ 0.69
SHANK3Q9BYB0 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 BTBD8-201ENST00000342818 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 FAM151A-202ENST00000371304 1444 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ILF2-205ENST00000615950 1906 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AC073094.1-201ENST00000453798 433 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 MRPL22P1-201ENST00000505398 616 ntBASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AC025154.2-201ENST00000550530 445 ntTSL 3 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SPACA3-205ENST00000580599 949 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AC009145.4-201ENST00000625119 1294 ntBASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 MCC-208ENST00000514701 2855 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 AC144522.1-201ENST00000625111 1658 ntBASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SHANK3Q9BYB0 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AC093484.1-201ENST00000441875 477 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 ALG1L13P-204ENST00000523017 765 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 UBA52-208ENST00000596304 554 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 VWCE-205ENST00000535710 1437 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 FAM90A2P-201ENST00000511144 1395 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 FAM90A25P-201ENST00000528404 1395 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 SKA2-202ENST00000437036 625 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 ORAOV1P1-201ENST00000503108 395 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 GMFG-209ENST00000600322 622 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AC005041.3-201ENST00000606287 649 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 BX088702.1-201ENST00000610784 235 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 AC073911.3-201ENST00000624401 631 ntBASIC19.37■□□□□ 0.69
SHANK3Q9BYB0 DIABLO-208ENST00000464942 2569 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 AP005117.1-202ENST00000581724 1908 ntBASIC19.36■□□□□ 0.69
SHANK3Q9BYB0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms