Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AC099552.1-201ENST00000431083 744 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 RHOXF1P1-202ENST00000635473 501 ntBASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 STMN1-203ENST00000399728 1712 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CHMP4AQ9BY43 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 AL360270.3-201ENST00000609118 1348 ntBASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 MIR1909-201ENST00000411312 80 ntBASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 COX11-210ENST00000639671 696 ntBASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 STRN-202ENST00000379213 2254 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 AC009090.5-201ENST00000624886 2285 ntBASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 PDIA3P1-201ENST00000471856 1510 ntBASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 WARS-232ENST00000556645 2508 ntTSL 5 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CHMP4AQ9BY43 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 WASH3P-207ENST00000560956 1394 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 FTH1P14-201ENST00000482930 551 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 AC106760.1-201ENST00000508690 800 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 RNA5SP486-201ENST00000515961 83 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 IL32-218ENST00000530890 774 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 MSTO2P-201ENST00000314835 1709 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 FOS-202ENST00000535987 1402 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 AL138709.1-201ENST00000614840 1693 ntBASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CHMP4AQ9BY43 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CHMP4AQ9BY43 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms