Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AL583810.1-201ENST00000553344 1045 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC105020.3-201ENST00000566036 560 ntTSL 4 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 BNIP3P29-201ENST00000598302 571 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AP005019.2-201ENST00000615104 511 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 AC011447.5-201ENST00000616168 564 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 HADH-212ENST00000638621 741 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 RCAN3-202ENST00000374395 6802 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 FLJ16779-201ENST00000612722 7638 ntBASIC16.92■□□□□ 0.3
TRAIPQ9BWF2 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 PRAL-201ENST00000624952 3286 ntBASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 AC099336.1-201ENST00000417053 1171 ntBASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 CSF2RBP1-201ENST00000447905 391 ntBASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 AC079316.1-201ENST00000548397 411 ntBASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 GNRHR2-203ENST00000581100 1187 ntBASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 ZNF114-204ENST00000595607 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAIPQ9BWF2 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AC073347.1-201ENST00000421633 2643 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AC103563.7-201ENST00000448734 478 ntTSL 3 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 FTH1P14-201ENST00000482930 551 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AC106760.1-201ENST00000508690 800 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 AL138799.1-201ENST00000448213 1675 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 DBET-201ENST00000630918 3363 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 TUBB1P2-201ENST00000422712 1306 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 TUBB1P1-201ENST00000503144 1300 ntBASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
TRAIPQ9BWF2 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
TRAIPQ9BWF2 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.89■□□□□ 0.29
TRAIPQ9BWF2 SLC9A7P1-201ENST00000554295 3311 ntBASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 57.5 ms