Protein–RNA interactions for Protein: Q99618

CDCA3, Cell division cycle-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDCA3Q99618 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 SH3BP4-201ENST00000344528 5044 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 AC239868.1-201ENST00000369385 493 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 AL137856.1-201ENST00000429398 773 ntTSL 3 BASIC15.81■□□□□ 0.12
CDCA3Q99618 DNAJB1P1-201ENST00000429417 1024 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 AP1B1P1-201ENST00000432373 827 ntTSL 3 BASIC15.81■□□□□ 0.12
CDCA3Q99618 AC012360.1-201ENST00000433219 674 ntTSL 5 BASIC15.81■□□□□ 0.12
CDCA3Q99618 OXNAD1-202ENST00000435829 1643 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDCA3Q99618 C14orf178-202ENST00000439131 632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 VDAC1P1-201ENST00000439229 848 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.81■□□□□ 0.12
CDCA3Q99618 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 RN7SL258P-201ENST00000478664 300 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 ARHGAP25-216ENST00000497079 1843 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 AC015689.1-201ENST00000525365 462 ntTSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 AC008805.1-201ENST00000590892 364 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 AC011466.3-201ENST00000596563 852 ntTSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 NCR1-206ENST00000598576 996 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
CDCA3Q99618 AC009884.2-201ENST00000603110 324 ntBASIC15.81■□□□□ 0.12
CDCA3Q99618 HIST2H2BB-202ENST00000609585 563 ntTSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC15.81■□□□□ 0.12
CDCA3Q99618 AMT-239ENST00000636865 1914 ntTSL 5 BASIC15.81■□□□□ 0.12
CDCA3Q99618 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
CDCA3Q99618 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
CDCA3Q99618 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.8■□□□□ 0.12
CDCA3Q99618 AL008718.2-201ENST00000609206 1313 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 FIS1-201ENST00000223136 734 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 OR9I1-201ENST00000302610 945 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
CDCA3Q99618 RPAIN-201ENST00000327154 815 ntTSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 NUP210P1-201ENST00000357061 876 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 LINC01388-201ENST00000416242 416 ntTSL 3 BASIC15.8■□□□□ 0.12
CDCA3Q99618 RPSAP31-201ENST00000416648 895 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 AL355334.1-201ENST00000417713 215 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 AC073150.1-201ENST00000450406 1084 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 RN7SL8P-201ENST00000461771 266 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 AC005779.2-201ENST00000593083 550 ntAPPRIS P1 TSL 4 BASIC15.8■□□□□ 0.12
CDCA3Q99618 AC103810.10-201ENST00000606504 343 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC15.8■□□□□ 0.12
CDCA3Q99618 HLA-C-210ENST00000640219 976 ntBASIC15.8■□□□□ 0.12
CDCA3Q99618 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC15.8■□□□□ 0.12
CDCA3Q99618 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC15.8■□□□□ 0.12
CDCA3Q99618 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 GOLGA8S-201ENST00000562295 1878 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
CDCA3Q99618 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
CDCA3Q99618 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDCA3Q99618 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDCA3Q99618 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC15.79■□□□□ 0.12
CDCA3Q99618 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC15.79■□□□□ 0.12
CDCA3Q99618 SEPT12-201ENST00000268231 1469 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
CDCA3Q99618 TOB1-AS1-201ENST00000416263 1351 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDCA3Q99618 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
CDCA3Q99618 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms