Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC18.46■□□□□ 0.54
CHMP4CQ96CF2 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.54
CHMP4CQ96CF2 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
CHMP4CQ96CF2 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AC087499.6-201ENST00000411576 835 ntBASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AC126696.2-201ENST00000563687 522 ntTSL 3 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AC092337.1-201ENST00000568699 1129 ntBASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AL158212.4-201ENST00000624062 1286 ntBASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 GSN-206ENST00000394353 2311 ntTSL 2 BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 CRLS1-203ENST00000452938 3859 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
CHMP4CQ96CF2 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 KRT8P44-201ENST00000441609 1350 ntBASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 KRT17P7-201ENST00000451704 1104 ntBASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 POLE2-203ENST00000553805 496 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 SPATA8-AS1-201ENST00000558722 465 ntTSL 3 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 HSPH1-201ENST00000320027 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ACSS2-202ENST00000360596 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 AC112693.3-201ENST00000624819 1983 ntBASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
CHMP4CQ96CF2 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 STK33-217ENST00000534493 1895 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 AP006294.1-201ENST00000415407 339 ntBASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 WFDC1-204ENST00000613603 549 ntBASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
CHMP4CQ96CF2 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms