Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 WSCD1-201ENST00000317744 5819 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 AGER-206ENST00000375070 1463 ntTSL 5 BASIC14.3□□□□□ -0.12
RNF4P78317 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC14.3□□□□□ -0.12
RNF4P78317 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 FAM109A-203ENST00000547838 2846 ntAPPRIS P3 TSL 4 BASIC14.29□□□□□ -0.12
RNF4P78317 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 API5-202ENST00000420461 2009 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 GALNT16-202ENST00000448469 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 PI4KAP1-201ENST00000610959 2425 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RNF4P78317 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 ABHD11-AS1-201ENST00000427153 662 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 AC099754.1-201ENST00000435884 454 ntTSL 3 BASIC14.29□□□□□ -0.12
RNF4P78317 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC14.29□□□□□ -0.12
RNF4P78317 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC14.29□□□□□ -0.12
RNF4P78317 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC14.29□□□□□ -0.12
RNF4P78317 AP001063.1-201ENST00000568332 529 ntBASIC14.29□□□□□ -0.12
RNF4P78317 AC009486.1-201ENST00000569860 813 ntBASIC14.29□□□□□ -0.12
RNF4P78317 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC14.29□□□□□ -0.12
RNF4P78317 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 AC015936.2-201ENST00000593177 259 ntBASIC14.29□□□□□ -0.12
RNF4P78317 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC14.29□□□□□ -0.12
RNF4P78317 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 AC005252.2-201ENST00000624630 1141 ntBASIC14.29□□□□□ -0.12
RNF4P78317 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 CYP2E1-201ENST00000252945 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC14.29□□□□□ -0.12
RNF4P78317 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC14.29□□□□□ -0.12
RNF4P78317 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC14.29□□□□□ -0.12
RNF4P78317 SGK1-205ENST00000413996 2686 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 CCNA2-202ENST00000618014 2797 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RNF4P78317 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 LCK-206ENST00000373564 2137 ntTSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
RNF4P78317 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
RNF4P78317 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
RNF4P78317 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.28□□□□□ -0.12
RNF4P78317 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC14.28□□□□□ -0.12
RNF4P78317 AC004066.1-201ENST00000502488 802 ntBASIC14.28□□□□□ -0.12
RNF4P78317 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.28□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms